Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5158g00008 ATGATGGATGCTGCCGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAAGCTCTTTCTATACTGTATTGCAAAGTATTGTCAATATTTCCATCTTTAGAAGCAGCTAGGCCTAGGAGCAAAGCTGGTATTGAGGCTTTATGTTCATTACACGTAGCCCTAGAGAAGGCCAAGAATCTTCTTCAGCACTGTTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGCCGTTCTTCTAAAATTTGAAAAGTCTAAATCTGCTATTAAAGATGGCCTTATGCAGGTGGAAGATATTGTTCCGCGTTCTATGGCATGTCAGTGTCAGGGGATTGTGAATGAACTTGAGGGTGTAAAATTTGCACTTGACCCATTGGAGAAGCAAGTTGGTGCTGATTTAATTGAACTGCTACATCAAGGGAGACAATGTAGCGACTCTAATGACGCCAGCGAGCTTGAGTGTTTTCACCAGTGCGCTATTAGACTTGGGATCACATCTTCGAGAGAAGCTCTTACAGAAAGAAGAGCTCTCAAGAAGCTCATTGAAAGAGCCAGGGCTGAGGAAGACAATCAGAAGGAATCAATAGTTGCATATCTTCTACACCTCATGAGGAAATATTCCAAGTTATTTAAAAATGAAATTTCTGATGACAATGATTCACAAGGTTCCGCTCCTTGTTCTCCCAGTACTCAGGGATCTGTTGAGTGCAGTGTTCCTAATAGTCAATGTCAGGCCCTTGAAAGAGAGATTTCAAAACGCTGTTCCATTAATTTAAATCCAATCAATAGGAGATCAGGTCAGATGCCTCTTCCACCTGAAGAGTTGAGGTGTCCAATATCTTTGCAACTTATGTGTGATCCCGTCATCATCGTTTCCGGTCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGACACGATACTTGCCCCAAGACACAACAGAAACTCGATCATCTTTTGTTGATTCCGAATTACTGTGTTAAGGGTCTCGTTGTTAACTGGTGTGAACAGAATGGAGTCCCTGTTCCTGGTCGCCCTCCTGAATCTTTTGATATTAACTACTCGACCTTGGCTTTATCAGAGCCTGAATCAACAAATTCAAAAGCTGTAAATAGTTTGAGTTCATGCAAGTCGAATGGTGTCAAAGTGGTTCCTTTAGAAGAGAGCGGCGTCTCAGAAGAAGCCGGAGTAGATAAAAACGAAGCTTTGTCTGCACCGGAGGAAGATACCGAGCAGTATCTGAGGTTGCAGAAAGTTTTGCTTGAAAAGACAGATTACAAGACAAAGTGCAATGTGGTCGAACAGTTAAGGATATTACTGAGGGATAAGGAGGAAGCCAGGAATTATATGGGAGCTCATGGATTTGTTGAGGCACTTTTGCAGTTTCTAAAGTCAGCTCTGTCTGAAGGGAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGTTATCGGCAGGAGTGTTACCATTGCTGGAGGAAATTTCTAACTCAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTGGAAGAAGCCAAGACCAAGATAGGGAAGACTCAGGCTGTCCAGTTCCTGATCCGTCTCCTTCAAGATGACACCGAAATTCAATGCAAACAAGATTCTCTCCACTCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTTTCATCTGGGATCATCAATGGCCTTCTGTCCCTTCTTGCAGGCCAGGGTGATGATAATAGCATGTGGACAGAGAAATGCATTCCTGTTCTCATAAATTTGGCTGCTTCTAATTTGGGAAAAGAGGAAATAATCTCAACCCCAGGACTCATTAATGCAGTGGCTAAGAAACTAGAATCTAGTGAGCTCTTAGAGCAAGAACAAGCTGTGTCTTGTCTTTTAATCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTAAGAGAAGGTATAATACCTTCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGGGAAAGAAAAAGCTCAGAAACTTTTGATGCTCTTTAGAGAGCAGCGACGAGATCCTTCACCTGTTAAGATACGTTTGTGTCCCCCTGCTCCTGAACCTGATAATAAGAAGAATATGGTTGTTTCTCAGCCAGAAACAAAACCTCTGATGAGTAAGTCATTGTCTAGAAGAATAATTGAGAAGCCTTTTAGATTTTTCTCCAAAAGCAAGAGTTATTCTATTTATCACATTTAA 2316 0.4162 MMDAAEVEENLFAASDAKLHGEMCKALSILYCKVLSIFPSLEAARPRSKAGIEALCSLHVALEKAKNLLQHCSECSKLYLAITADAVLLKFEKSKSAIKDGLMQVEDIVPRSMACQCQGIVNELEGVKFALDPLEKQVGADLIELLHQGRQCSDSNDASELECFHQCAIRLGITSSREALTERRALKKLIERARAEEDNQKESIVAYLLHLMRKYSKLFKNEISDDNDSQGSAPCSPSTQGSVECSVPNSQCQALEREISKRCSINLNPINRRSGQMPLPPEELRCPISLQLMCDPVIIVSGQTYERVCIEKWFRDGHDTCPKTQQKLDHLLLIPNYCVKGLVVNWCEQNGVPVPGRPPESFDINYSTLALSEPESTNSKAVNSLSSCKSNGVKVVPLEESGVSEEAGVDKNEALSAPEEDTEQYLRLQKVLLEKTDYKTKCNVVEQLRILLRDKEEARNYMGAHGFVEALLQFLKSALSEGNLKAQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISNSSSYGCATALYLNLSCLEEAKTKIGKTQAVQFLIRLLQDDTEIQCKQDSLHSLYNLSTVPSNIPNLLSSGIINGLLSLLAGQGDDNSMWTEKCIPVLINLAASNLGKEEIISTPGLINAVAKKLESSELLEQEQAVSCLLILCNGNEKCSHKVLREGIIPSLVLISVNGTPRGKEKAQKLLMLFREQRRDPSPVKIRLCPPAPEPDNKKNMVVSQPETKPLMSKSLSRRIIEKPFRFFSKSKSYSIYHI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5158g00008 771 PANTHER U BOX DOMAIN-CONTAINING 24 710 - -
Pral5158g00008 771 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Pral5158g00008 771 SMART arm_5 539 580 IPR000225 GO:0005515
Pral5158g00008 771 SMART arm_5 455 499 IPR000225 GO:0005515
Pral5158g00008 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Pral5158g00008 771 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pral5158g00008 771 Coils Coil 176 203 - -
Pral5158g00008 771 SUPERFAMILY ARM repeat 203 707 IPR016024 -
Pral5158g00008 771 SUPERFAMILY RING/U-box 278 357 - -
Pral5158g00008 771 Gene3D - 532 706 IPR011989 -
Pral5158g00008 771 Gene3D - 423 531 IPR011989 -
Pral5158g00008 771 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Pral5158g00008 771 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pral5158g00008 771 CDD RING-Ubox_PUB 281 333 IPR045210 -
Pral5158g00008 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5158g00008 Pral-Chr5158 123595 127371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5158g00008 2 770 U-box Gene Family AT1G24330 61.977 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5158g00008 - - gmx:100814944 1077.77