Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5155g00056 ATGGGAAGGTCTCCATGCTGTGATGAGAATGGACTGAAGAAAGGACCCTGGACACCCGAGGAAGATGAAAAGCTCGTGCACTATATTCAGAAACATGGCCATGGAAGTTGGAGAGCCCTCCCCAAACTTGCTGGGCTTAACAGATGCGGAAAGAGCTGTAGGCTAAGGTGGACCAACTATTTAAGACCTGATATTAAGAGGGGCAAATTTTCTCAAGAAGAGGAGCAAACTATTCTCCACCTCCATTCCATCCTTGGAAACAAGTGGTCTGCAATTGCATCTCATCTTCCAGGCAGGACAGATAATGAGATTAAGAATTTCTGGAATACTCATTTAAAGAAGAAGCTGATTCAGATGGGCTTTGACCCAATGACTCATCAGCCAAGAACTGACCTCGTTTCCAGCTTGCCCTATCTGCTGGCTCTGGCCAACATGACGGACCTAATGCATCATCCATCACTGGATGAACAAGCCCTGAAGCTACAAGCTGAGGCAGCACAGTTGGCCAAGCTTGAATACCTTCATTATTTACTCCAATCCACAAGTTCCTTGACTACCGACTCCTATGACCAGAGTGCCAACATCGCTAACATGGAAGCCCTCAATTTGCTAACTTCAATGTCTAATGTCAACGAGAATCCAGTTATAAACTGCCCACAAATGGATAACGCATCCTTTTTTTCTAATGGGATTGCTGGCTCTCAACCACTCCACCACCCAAACATGTTATCTCAAGTCTCAGACCCACAAGTCTCTTTCAGTACTTCCCAACCATGTTTGAATAGTGAGAAGAATCAGGATACTAATAATAACTTTACAATGGTTAGCGAAGGGGATAACATTGGCAATGAGTCTTCATGGATGATTCCGTCTCCTGCTCCATCTGTTCACCCAACTGTGACAGGGACCTCATCAAACAGCAATCCTGGAGATGCCAGCAGCCGCACCTCAAGCTATGGAGGAGGAACCTCATTTTATTGGCCTGAACTCTTTTTCGACGACCCAATTATACATAATGCTTGA 1023 0.4516 MGRSPCCDENGLKKGPWTPEEDEKLVHYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMHHPSLDEQALKLQAEAAQLAKLEYLHYLLQSTSSLTTDSYDQSANIANMEALNLLTSMSNVNENPVINCPQMDNASFFSNGIAGSQPLHHPNMLSQVSDPQVSFSTSQPCLNSEKNQDTNNNFTMVSEGDNIGNESSWMIPSPAPSVHPTVTGTSSNSNPGDASSRTSSYGGGTSFYWPELFFDDPIIHNA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5155g00056 340 CDD SANT 69 112 IPR001005 -
Pral5155g00056 340 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral5155g00056 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5155g00056 340 SMART sant 66 114 IPR001005 -
Pral5155g00056 340 SMART sant 13 63 IPR001005 -
Pral5155g00056 340 FunFam MYB-related transcription factor 13 66 - -
Pral5155g00056 340 CDD SANT 16 61 IPR001005 -
Pral5155g00056 340 Gene3D - 11 67 - -
Pral5155g00056 340 MobiDBLite consensus disorder prediction 248 318 - -
Pral5155g00056 340 FunFam Transcription factor MYB39 69 130 - -
Pral5155g00056 340 Gene3D - 69 116 - -
Pral5155g00056 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5155g00056 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5155g00056 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Pral5155g00056 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5155g00056 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5155g00056 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5155g00056 Pral-Chr5155 285552 287082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5155g00056 1 337 MYB Transcription Factor Family AT1G34670 56.011 7.33e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5155g00056 Myb_DNA-binding 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5155g00056 K09422 - gmx:100782792 478.018