Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5155g00042 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTATAATCACCGACAAGAATACAGGAAAATCTAAAGGCTATGGATTCGTAACATTCCGTGATCCAGAATCAGCCAGAAGAGCTTGTGCTGATCCAAACCCAATAATAGATGGAAGAAGATCCAACTGTAATATTGCTTCTCTGGGACGGCCTCGACCTTCCCCACCCCGAGGGAGGAATACATTTCATGGCGGAAGCACGTCACAGAGTGCAGCATCATACGGTGGCGCTCCGGCAGCAGCAGCACCGCCGCCGCCGCCGCCTCCTCCGGCGGCGGGGCCTGGGCTGATGTACCCGCCATATGGTAAAAATGCAGGCGATACTGATGGCTACTACAGATCAAATAACGGCTACTCTCCCTACTCTGCTGATTACGGGTACCACCAAGCGGCATTGTACAACCCCCAGATTCAGCAGCCGCAATACTACCAGCAAATGTATGGAGCTTCTTCATCGGGCGTGAGTTCCCCGTATTACTATGGGTATTCTGTGCAGCCACCCAGGCCCTCTTATTCTACGCCCCAGCCTCATCGCCTGACACCTGGACCCCCATCCTATCTCTACTACCCTTACCCTTCACCCTCACCCGCACCCCCACCCATGGATCTCTCGTTCTCCGCTTATCGTACCCCTCGACAACCCACACTGTTGAGGCAGCCCTTCCCTTCCTCTACTGATTCAGAGTCACAGACTCAGCAGCGTACTTCCTCCGAGACCGCAGCTGGAGTAGTTACGGCAGCTTCATCGGAAAGTCCGAATAGCCAAGGGAAAAACTAA 912 0.5329 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRSNCNIASLGRPRPSPPRGRNTFHGGSTSQSAASYGGAPAAAAPPPPPPPPAAGPGLMYPPYGKNAGDTDGYYRSNNGYSPYSADYGYHQAALYNPQIQQPQYYQQMYGASSSGVSSPYYYGYSVQPPRPSYSTPQPHRLTPGPPSYLYYPYPSPSPAPPPMDLSFSAYRTPRQPTLLRQPFPSSTDSESQTQQRTSSETAAGVVTAASSESPNSQGKN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5155g00042 303 PANTHER BOULE-RELATED 6 280 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 74 145 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 253 303 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 105 119 - -
Pral5155g00042 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pral5155g00042 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pral5155g00042 303 Gene3D - 3 111 IPR012677 -
Pral5155g00042 303 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Pral5155g00042 303 CDD RRM_RBM24_RBM38_like 16 91 - -
Pral5155g00042 303 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 214 246 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 214 303 - -
Pral5155g00042 303 MobiDBLite consensus disorder prediction 124 141 - -
Pral5155g00042 303 SMART rrm1_1 17 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5155g00042 Pral-Chr5155 237075 240846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5155g00042 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 9.32e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5155g00042 K25006 - gmx:100788516 347.436