Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5155g00040 ATGGAGCCCTCAGATCCAATATGTATGTCTTATTGCCTCCCTTCTTCACGTGATGATCCTACTGACTCCAAACTTTTGCCTGCCATGAACCGGGCGAGTCATCAGCTTCAGCCCCTACCTCTACTGAGCAGCTTCCTTGGTTCAACTCCATTTAGCTCAAAACCTAACCCTACGACTCGTGATGATGCTGGAGAGGAGGACGTTACGGTAGCCCTACACATAGGACTCCCCCATAATTCCGGTACTGATTCTGCAGGTCCAAACGGAGCTATCAGTGAAGTCCAAGTACCTGGCAATTACTGGATACCAACCCAAGAACAAATCCTCATCGGATTCAGTCATTTCTCTTGTCCCGTCTGCCTCAAAACCTTCAACCGCTACAACAATCTCCAGATGCATATGTGGGGACATGGATCACAGTACCGAAGAGGACCAGAGTCGCTGAAAAGAACACATCCGAGGCCGTTGTTGGACATCCCATGCTATTGCTGCGCGAGAGGATGCAGGAACAACATAGAGCACCCGAGGGCAAAGCCTCTGAAGGACTTTAGGACGCTGCAGACGCATTACAAGAGGAAGCACGGAAGCAAGCCCTCTATGTGTCGCAGGTGTGGCAAGACATTGGCGGTGAAGGGCGACTGGAGAACTCACGAGAAAAATTGTGGCAAGCGATGGCTTTGTGTCTGTGGCTCTGACTTTAAACACAAGAGGTCGCTTAAGGACCATATCAAAGCCTTTGGCTCTGCTCATTACCCTCTCTCTTCTTCCTCCGATGCCATCTGA 783 0.5032 MEPSDPICMSYCLPSSRDDPTDSKLLPAMNRASHQLQPLPLLSSFLGSTPFSSKPNPTTRDDAGEEDVTVALHIGLPHNSGTDSAGPNGAISEVQVPGNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDIPCYCCARGCRNNIEHPRAKPLKDFRTLQTHYKRKHGSKPSMCRRCGKTLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSSDAI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5155g00040 260 PANTHER ZINC FINGER PROTEIN WIP2 30 253 IPR043584 GO:0003700|GO:0010468
Pral5155g00040 260 FunFam zinc finger protein WIP2-like 114 137 - -
Pral5155g00040 260 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Pral5155g00040 260 Gene3D Classic Zinc Finger 156 247 - -
Pral5155g00040 260 FunFam Zinc finger protein WIP2 168 250 - -
Pral5155g00040 260 Gene3D Classic Zinc Finger 114 137 - -
Pral5155g00040 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Pral5155g00040 260 SUPERFAMILY beta-beta-alpha zinc fingers 110 137 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5155g00040 Pral-Chr5155 234967 236037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5155g00040 25 252 C2H2 Transcription Factor Family AT1G34790 58.984 3.48e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5155g00040 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5155g00040 - - ccaj:109809318 381.333