Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5155g00021 ATGTATAACAAGACGAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGCTCGGAAGAAGAGGCTCTTGCGGCTCTGAATAGTCTCGAATCGTATGAATACGAAGGGCGTATACTGAGACTGGCATATGCTAGGCCGAAAAAGAAGAAAGCTCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTCGTTGGAAATTTGTCCTATGAAGCAAGGGCTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGTGGTAGTGTTGTTTCTGCCGAGGTTATATTTCATGACAACCCTAGAAAGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAGAGAAGCTGAGGCCGCCCTTTCTGAGTTCCAAGGGAAGAATTTTATGGGAAGGCCAATCAGGGTGGCGCGTAGTAAGCAGTTTGTTAAACAACCAGTAGAGGAGAGTGCGAGGTCTGAAGATGAATCTTCTGAGACCAGCGTGAATGGGGTAGAAGCAGATAAAGCTGATTGA 513 0.4503 MYNKTRNRGLAFVEMGSEEEALAALNSLESYEYEGRILRLAYARPKKKKAPPPVQQKTVTFNIFVGNLSYEARAKDLREFFDSGSGSVVSAEVIFHDNPRKSAGYGFVSFKSKREAEAALSEFQGKNFMGRPIRVARSKQFVKQPVEESARSEDESSETSVNGVEADKAD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5155g00021 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 140 IPR000504 GO:0003723
Pral5155g00021 170 MobiDBLite consensus disorder prediction 140 170 - -
Pral5155g00021 170 CDD RRM_SF 63 135 - -
Pral5155g00021 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 134 IPR000504 GO:0003723
Pral5155g00021 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 38 IPR000504 GO:0003723
Pral5155g00021 170 SUPERFAMILY RNA-binding domain, RBD 5 54 IPR035979 GO:0003676
Pral5155g00021 170 PANTHER OS02G0815200 PROTEIN 3 139 - -
Pral5155g00021 170 Gene3D - 1 48 IPR012677 -
Pral5155g00021 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Pral5155g00021 170 Gene3D - 49 156 IPR012677 -
Pral5155g00021 170 SMART rrm1_1 62 136 IPR000504 GO:0003723
Pral5155g00021 170 SUPERFAMILY RNA-binding domain, RBD 53 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5155g00021 Pral-Chr5155 130182 132331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5155g00021 6 144 Eukaryotic Initiation Factors Gene Family AT3G16380 26.897 4.74e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5155g00021 - - qsa:O6P43_015341 243.432