Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5155g00020 ATGCACAGAAAGCTCTTCCCTGCATCGTCCACAACAAATCAAACCCAAGAGTGCTCTGACTTTTGTGAACCAACTTGCCCGTACAACTGCTTTTCCTTTCCAGACCACTACTCCCCTCCACGGCCGCCTCCGCCGCCCATTTTACCTCCAAGTAATCAGATCACGTCCTACTTGGCCATCGTTGCTTCACTATTCACTGTCGTATTTGTTCTTGTTGGTTTCTACGTTCTCAAAGTAAAGTGCTACTCCGACTGGTGTGGGCGGAGACGCAATGGATCCTTTACCACCCAATCAGACAGCCTTGAGGATGAGTTTGTTCGCGAGAATCAAGTTGATCACCCCATCTGGTTGATCACCACAATTGGTTTGCAGCAGTCTATCATAAACTCCATCACGGCTTGTAAGTACAAAAAGGGCGAGGGACTGATCGAAGGAACAGAGTGTTCAGTGTGCTTGAATGAATTCCAGGAAGGCGAAACCTTGAGACTCTTGCCAAAATGCAACCACGCCTTTCACATCCCCTGTATCGATACGTGGCTGCGGTCTCATGTCAATTGTCCTCTTTGTCGTGCCGGTATTGTCCCTAACAATGCCACTTCCGGTGCAGCCATCTTAAATATGAGTTCATCCGTGGAGGAAAACTCCAACACGGTGGTAAGAAATGAAGACGCCCGAGTTGAGCGGAATGGTGGTGAATTAATTATTGTGGACTCTGAAAACCGGGAGGGAACAGGAGAAGCAGGGGAAGCCGAGGAGTTCGCTCATGAATCAATTTCAAAGGAGTGCCCGAATGTTGATGAGAGTGAACAGATTGTGGATGATATGCGAAAAGGAACGAGTTCTGTGTCGATGGATTCTCCCGTTGATGATATAAACCATGACACTGAACGACACACGGTCAATCTTCTGAAGAAAGGTGGTGAATACTCAACACTCTTTAAATCAGGGCGTCGGTCTTCAGTTGCACAATGTCTTCACGTAACCCCAGTTTCGATGAAGAGGTCAGTCTCCTGCAGTGGAAGGATTGTATCTACGAGAGGCTACAAGAGTCTGAATTCAAGTCTTGCCCGCTAG 1074 0.4777 MHRKLFPASSTTNQTQECSDFCEPTCPYNCFSFPDHYSPPRPPPPPILPPSNQITSYLAIVASLFTVVFVLVGFYVLKVKCYSDWCGRRRNGSFTTQSDSLEDEFVRENQVDHPIWLITTIGLQQSIINSITACKYKKGEGLIEGTECSVCLNEFQEGETLRLLPKCNHAFHIPCIDTWLRSHVNCPLCRAGIVPNNATSGAAILNMSSSVEENSNTVVRNEDARVERNGGELIIVDSENREGTGEAGEAEEFAHESISKECPNVDESEQIVDDMRKGTSSVSMDSPVDDINHDTERHTVNLLKKGGEYSTLFKSGRRSSVAQCLHVTPVSMKRSVSCSGRIVSTRGYKSLNSSLAR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5155g00020 357 FunFam RING-H2 finger protein ATL54 123 196 - -
Pral5155g00020 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Pral5155g00020 357 PANTHER RING-H2 FINGER PROTEIN ATL16 38 290 IPR044600 GO:0016567|GO:0016740
Pral5155g00020 357 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pral5155g00020 357 Pfam Ring finger domain 147 190 IPR001841 -
Pral5155g00020 357 CDD RING-H2_EL5-like 147 190 - -
Pral5155g00020 357 SUPERFAMILY RING/U-box 141 196 - -
Pral5155g00020 357 SMART ring_2 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5155g00020 Pral-Chr5155 127186 128868 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5155g00020 2 194 C3H Transcription Factor Family AT1G72220 50.459 3.95e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5155g00020 - - pcin:129294734 550.436