Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5146g00003 ATGGACGACAAGAGCTTCCAGACGACGACGATAGGAGTGGTACTTGATTTAGGGTCGCGCATGGCAAAAGAGCAGAAGACAGCCATGGAAATCGCTGCCCAAGAATTTAACGGCCTCGCACCTGGCCTGCTCTTCCATTTCCACCATTCTCACGGCAGCTCCGCAGCTTCTGTCGCCGCCGTTATGGGTCTCGCGCGCAGCAAGCAAGTGCGAGCTATCATAGGGACGATATCACACGGCGAAGCGACTATGGCAATTGAAACTAACAGCACATTGAAGAACATTCCTATCTTATCCCTGACTTCGCTCGCAGTGAGCAGAGACACAGAGATGTCTTCAACTCCATTGCCATACTTCATCCAGTTGGGCACCGATATTACCTTCCACACGCGATGCTTTGCCGCCATTGTCGGGGAATTCAAGTGGCCCAAAGTGACAGCAATCTATGAGCAAAATAACGGAGTTTTCTCTGATCCAAAGACATTAGCTCTCTTTTCCCATTCGCTTCGCCTTGTTGGTTCTGAGATTGTTGACCATTCAGCTCTGCCTTCTCTTTCTTCTCTGTCCAACCCTAGAGTTACTATTGAAAAAGAACTTAGCAGGCTCAAGAGCAACAATAACAGGGTTTTCTTGGTTGTTCAAGCTTCTTTAGAGATGGCGAATCTTCTTTTTGAGAGGGCAAAGCAAATGGGTTTGATGGAGAAAGAATCGGTATGGGTCATACCCGATGAGATTGCTGGTCTCATTGATTCGGTGGATTCCTCTGTTATTATTAACATGCAAGGTGTTGTTGGATTTAAAACCCACTTTCATGAAATGAGCGAGACATTCAGACGATTCAGATACAAATTTCGAAGAAAATTCTCGTTGGAGTACCCTGAAGAAGAGAACATTAACCCGAGTATCTTTGCACTTCGGTCATACGATGCAACTTGGGCTATTGCTCTCGCTGCAAAGAAATCACAAAGGAAGTTCTCCCAGAAAGAATTTTCAGAAAGCATTCTTGCCAGCAACTTTGAAGGACTAAGTGGCAAGATTCGCTTTAAAAATGGAAAAATATTGTGGCCACGAGCCCTTGAAATAGTTAATGTGATCGGGAAAAGCTATCGAGATTTGGCATTTTGGCCTCCAGCATTTGGTTTCTCTAAGAACCTTGCCAGACATCAGTTAATGGAGGTGACGAAAAATAACGGTTCTACTGGAACCTTAGAAACAGTTTACTGGCCAGGAAATTTACTTTCAGTTCCCAAGGGTTGGACTTATGGTAACGAGGGAAAGACATTGAGAATTGGTGTGCCCGCACAAGGTGCCTTTACCCATTTTGTGAATGTGACTTACGATCAGAGTCGGAATAAAACTTCTATCACAGGTTTCTCAATTGATGTCTTCAAAGCTGCTGTTAAACGTCTTCCATATCACTTGCAATATGAGTTTATACCAGTCAACTGCTCTTATGATGAAATGGTTCAGAAAGTCTACAAGAAGGAACTTGATGCTGCTGTTGGAGATACAGAAATAATGGCATATAGATATCGTTATGTAATATTTTCTCAACCATATGTTGAATCTGGCCTTGACATGGTGGTAACAGTAAAGCCCAATAAATCAAAACAGACGTGGATGTTCACGAGTGCCTTCACAAAAGAAACGTGGCTGGTGATGACAGCAATGCACATTTTCATTGGATTTATCATCTGGCTGATGGAACGGCAAGTGAATGAAGAATTGAGGGGACTTGGGGCTATGCTTTGGTTTTTAGTCACTATAATCTTCTATGCTCACAGAGAACCAATCAAAAACACTTTTGCTCGGATTGTGTTGGCACCATGGTTATTCATAATCCTTATTCTCACGACAAGTTTTACAGCTAGTTTGACATCCATGATGACCATCAGTCATCTTGAACCGTCTGTGTTGGACATCAAAACCCTTCAAAGGACTAATGCCCCTGTTGGGTGTAACGGAAATTCATTTATCGTGAGATATTTGACAGACGTACTAAAATTTAAGCCTAAGAATATTCGTAAAATTGATTCCATAAGTGACTACCCTACAGCCTATAAGAACAGGGACATTGAAGCAGCTTTCTTTGTTGCACCACATGCTAAAGTCTTCCTTGCCAAGTACTCATGCGCAGGCTTCATTAAAGCAGGGGATACTTTCAAGCTTGGAGGATTTGGATTTGTGGGTTTGTCTTTTCCTTGTCATTGTGATCACTTTAGGATTTGCTTGGTGAAGTGA 2241 0.4284 MDDKSFQTTTIGVVLDLGSRMAKEQKTAMEIAAQEFNGLAPGLLFHFHHSHGSSAASVAAVMGLARSKQVRAIIGTISHGEATMAIETNSTLKNIPILSLTSLAVSRDTEMSSTPLPYFIQLGTDITFHTRCFAAIVGEFKWPKVTAIYEQNNGVFSDPKTLALFSHSLRLVGSEIVDHSALPSLSSLSNPRVTIEKELSRLKSNNNRVFLVVQASLEMANLLFERAKQMGLMEKESVWVIPDEIAGLIDSVDSSVIINMQGVVGFKTHFHEMSETFRRFRYKFRRKFSLEYPEEENINPSIFALRSYDATWAIALAAKKSQRKFSQKEFSESILASNFEGLSGKIRFKNGKILWPRALEIVNVIGKSYRDLAFWPPAFGFSKNLARHQLMEVTKNNGSTGTLETVYWPGNLLSVPKGWTYGNEGKTLRIGVPAQGAFTHFVNVTYDQSRNKTSITGFSIDVFKAAVKRLPYHLQYEFIPVNCSYDEMVQKVYKKELDAAVGDTEIMAYRYRYVIFSQPYVESGLDMVVTVKPNKSKQTWMFTSAFTKETWLVMTAMHIFIGFIIWLMERQVNEELRGLGAMLWFLVTIIFYAHREPIKNTFARIVLAPWLFIILILTTSFTASLTSMMTISHLEPSVLDIKTLQRTNAPVGCNGNSFIVRYLTDVLKFKPKNIRKIDSISDYPTAYKNRDIEAAFFVAPHAKVFLAKYSCAGFIKAGDTFKLGGFGFVGLSFPCHCDHFRICLVK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5146g00003 746 Pfam Ligand-gated ion channel 548 654 IPR001320 GO:0015276|GO:0016020
Pral5146g00003 746 Pfam Bacterial extracellular solute-binding proteins, family 3 452 716 IPR001638 -
Pral5146g00003 746 Gene3D - 311 431 - -
Pral5146g00003 746 SUPERFAMILY Periplasmic binding protein-like I 9 419 IPR028082 -
Pral5146g00003 746 Gene3D - 3 129 - -
Pral5146g00003 746 Gene3D - 449 522 - -
Pral5146g00003 746 Pfam Receptor family ligand binding region 26 364 IPR001828 -
Pral5146g00003 746 Gene3D - 130 299 - -
Pral5146g00003 746 SMART GluR_14 427 613 IPR001320 GO:0015276|GO:0016020
Pral5146g00003 746 FunFam Glutamate receptor 423 538 - -
Pral5146g00003 746 FunFam Glutamate receptor 539 672 - -
Pral5146g00003 746 FunFam Glutamate receptor 129 298 - -
Pral5146g00003 746 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 729 IPR015683 -
Pral5146g00003 746 CDD GluR_Plant 426 734 - -
Pral5146g00003 746 Gene3D - 540 677 - -
Pral5146g00003 746 SUPERFAMILY Periplasmic binding protein-like II 404 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5146g00003 Pral-Chr5146 15383 18956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5146g00003 11 734 Ion Channels AT5G11180 30.570 1.06e-107 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5146g00003 - - gmx:100778941 896.73