Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5144g00009 ATGGATGACACTGAGGATGATGCAAAGTATGCTCCTGACCCATACGATGTAAGTCATCACCAAGGTTATGGTTATTTGAATAGTCAGAAACTTCCAGTTGGGAGTTCTCAACATTCTGAGCCAGTTAGAAGTGAGTATGCTGAAGATGATAATGATTATGAGGAAGAAGACAACGGAGAACATATAGAACTGGAGGATGATGATGAGGAGGAGGAGGAGGAGGATGATGAGGTTGATCAAGGTAACAGCATTGAAGTTCCCCAGAAAGGAGGTGATGACAATGGTGATGACGAAGAAGATGATGAGAATGGGGATGGGGATGATAGTGATAATGACTTTGCTGCTGGTGCTGATGATGATGATGATGATGATAAGCAGAAAAGTTACACCATAAGGATTGAAGATGATTTAGAATCTCACCCAAAAAAGAGAAAGCTGAAGAGTTTGATTTCAACTTATGAATTTGCACCCCGTGTACCTGCACCAGCAGTTGCAGCCCCTTCAGCTCCTAAACCGTCCTTTGGTGGCAGAAATTCCCTTACTGACTGGACTGAGCATGAGACATTTGTTCTTCTTAATGCTTGGGGTGACCGGTTTATTCAACGTGGAAAAAAGAGTCTCCGGTCTGAGGAATGGCAAGAAGTAGCAGAAAGGGTAAAAGAAGTTTCAAAAATCGAAAGGACAGATACTCAATGTAGGAATAGACTTGACACATTAAAGAAAAAGTACAAAAAGGAGAAGGCCAAATTAGCAGAAATGGGTGGTGGAACTAGTAAGTGGGTTTATTTTAATACAATGGATAAACTGTTGTCCTCTCCTCAACCACAAGCTGGTCTATCTTGTGGTTTGGACTCAGGAGATTACGTCTTCTCAAACCCTCGAGTTTATTTGAAACGTGCAAATGTGTGTGATGAAATGAGGGATAGTCCAGGGAATTCAGAGTCTACTGGCGAAGAAGATTCAGTTGGACTTCAGCCAAAGAAAAGAAGTTCTAGAAGGAACAATGATGAGACTTCTTCCTTCAAATTACTAGCTGATTCCATTCAGAAATTCAGTGAGATATATGAGAAGATTGAAAATAACAAAAGGCAACAGATGGTGGAACTAGAAAAGATGAGGATGGAATTCCAAAAGGAATTGGAGATGCAGAAGAGGCAAATTTTCGAGAAAGTGCAGAACGAGATTGCGAAACTGCAGCAGAGAGATGAGGAGGAGAATGATGAATCTGCTGAGAACGGTATGTAA 1245 0.412 MDDTEDDAKYAPDPYDVSHHQGYGYLNSQKLPVGSSQHSEPVRSEYAEDDNDYEEEDNGEHIELEDDDEEEEEEDDEVDQGNSIEVPQKGGDDNGDDEEDDENGDGDDSDNDFAAGADDDDDDDKQKSYTIRIEDDLESHPKKRKLKSLISTYEFAPRVPAPAVAAPSAPKPSFGGRNSLTDWTEHETFVLLNAWGDRFIQRGKKSLRSEEWQEVAERVKEVSKIERTDTQCRNRLDTLKKKYKKEKAKLAEMGGGTSKWVYFNTMDKLLSSPQPQAGLSCGLDSGDYVFSNPRVYLKRANVCDEMRDSPGNSESTGEEDSVGLQPKKRSSRRNNDETSSFKLLADSIQKFSEIYEKIENNKRQQMVELEKMRMEFQKELEMQKRQIFEKVQNEIAKLQQRDEEENDESAENGM 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5144g00009 414 FunFam trihelix transcription factor ASIL2 183 245 - -
Pral5144g00009 414 ProSiteProfiles Myb-like domain profile. 183 240 IPR001005 -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 307 338 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 321 336 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 47 81 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 22 41 - -
Pral5144g00009 414 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 171 405 IPR044823 -
Pral5144g00009 414 Coils Coil 355 408 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 92 119 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 1 144 - -
Pral5144g00009 414 Pfam Myb/SANT-like DNA-binding domain 182 269 IPR044822 -
Pral5144g00009 414 Gene3D - 183 245 - -
Pral5144g00009 414 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5144g00009 Pral-Chr5144 81862 84088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5144g00009 183 411 Trihelix Transcription Factor Family AT1G54060 33.700 1.56e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral5144g00009 Myb_DNA-bind_4 2.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5144g00009 - - qsa:O6P43_018122 492.271