Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5140g00004 ATGGATGTTACGTCTCTCGGACCAAATAGTAACACCCAAACTGATCAATACCCTTTGCTGATGGAGCAGCCAGAAACCCACAGTGGTCATCAGCACGTAATTGACATTACAAGAAATAGTAATGACTTATCCAGCTCTACTCAAGATGATCAACATCGTGAATTGCATTTGCCACATGATGAAGATCAACCATCAGTTGGCACGCAAGTTCCCACACCCCAATCATCATCATCTTCATCATCCAGGTTAAACTCTACCAATTCCTCATCGACAAGAAGAGGTGAGGGATATGGTCATCACAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATTGTTGTCTTGTCAATATCCAGGAATGAAAATCCCAAAGCTCCATTATTTGCATGGATTGTGGGTTATGCGTCTGGTTGTGTTGCTACACTTCCTATTCTTTATGTTCGTTATCAAAACCGTAATCAAAGCACTGGACAAAATTTGTCTCAGCCATCTCAGGGATCTTCTGGAAGCAATCCTCCAGAACGGACTTCTTATACTGCAATCTCTGTTGCTTATGTTTCCGACGAAGAGAATAGCCGTACTACTGAATCAGCTACAGGAAATGCTGGGATTCCTGGATCCCTTAGTTCTAGGTTTAGTGGTCTAGTAGACCATTTCAAAATGGCCTTAGATTGCTTCTTTGCGGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGATTATGTATAGTGTTTCTTACCTTCAGCTGCATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGGATTCGAGAGGACTTTTCTCAAACTAGAGGAGCCACAGTTGAATCTATTAATGCCCTGCCTATATATAAGTTCAGTTTGAAGAAAAGCGAAAATAATGATGATCCGAATGGCAATACAGATATAGATGAAGGAGGGACCTTGGCTGCTGGGACGGAAAAGGAGCGATCCATATCTGGAGAAGATGCTGCTTGTTGCATTTGCTTGGCGAAATATGCAGATGATGATGACCTTAGGGAGCTACCTTGCTTCCATGTCTTTCATGTTGAGTGTGTGGACAAGTGGCTAAAGATAAATGCATGTTGTCCTCTCTGTAAAAGCGAGGTCGGTACAAGTGTCCTTTCAGCAGGGGAGTCCAGTTAG 1266 0.4242 MDVTSLGPNSNTQTDQYPLLMEQPETHSGHQHVIDITRNSNDLSSSTQDDQHRELHLPHDEDQPSVGTQVPTPQSSSSSSSRLNSTNSSSTRRGEGYGHHRRSPLNSGLWISVELVVTVGQIIASIVVLSISRNENPKAPLFAWIVGYASGCVATLPILYVRYQNRNQSTGQNLSQPSQGSSGSNPPERTSYTAISVAYVSDEENSRTTESATGNAGIPGSLSSRFSGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFSLKKSENNDDPNGNTDIDEGGTLAAGTEKERSISGEDAACCICLAKYADDDDLRELPCFHVFHVECVDKWLKINACCPLCKSEVGTSVLSAGESS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5140g00004 421 SUPERFAMILY RING/U-box 360 412 - -
Pral5140g00004 421 MobiDBLite consensus disorder prediction 47 61 - -
Pral5140g00004 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 413 IPR013083 -
Pral5140g00004 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 410 - -
Pral5140g00004 421 MobiDBLite consensus disorder prediction 40 103 - -
Pral5140g00004 421 SMART ring_2 366 406 IPR001841 -
Pral5140g00004 421 MobiDBLite consensus disorder prediction 169 189 - -
Pral5140g00004 421 Pfam Ring finger domain 365 407 IPR001841 -
Pral5140g00004 421 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Pral5140g00004 421 MobiDBLite consensus disorder prediction 65 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5140g00004 Pral-Chr5140 62490 67015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5140g00004 1 413 C3H Transcription Factor Family AT1G80400 58.354 8.85e-168 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5140g00004 - - gmx:100819729 650.973