Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5140g00003 ATGGCTCTCGGACTTGAAATCACAGAGCTAAGGTTGGGTCTTCCCGGCGGTGGTGGGGATGGTCAGGACAAGAGTACTACGACTGAGATGATGATGACGACCAAGAAGAGGGTGTTCTCTGAGATTGGCCATGTCGATGGTGGTGCTGGCGGTGGCAGCGAGGATGAGAACAGCTGCTCGGGCGACCGGAAAACACCCGCGAAGAACCCAGTTGTGGGGTGGCCGCCGGTGGGGTCGTACCGGAGGAGAAATAGCATGAGTGAAGGTCCCAAAATTTACGTGAAGGTTAGTATGGATGGAGCTCCTTTCTTGCGAAAAGTTGATTTGGGTTTGCAGAAGGGCTACTCCGAGTTAGCCTCATCCTTGGAGAAGCTCTTTGATTGCCACGGAATCGGAGAGGCATTGAAGGGTGTGGACAATTCTGAACTCGTTCCCATTTATGAGGACAGGGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTCATAGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCGGAGGCAAAAGGCTTCGATCTGCAGCCAAAAGGGTCTTCGAAGGGCAAAACGAAGTGA 591 0.5195 MALGLEITELRLGLPGGGGDGQDKSTTTEMMMTTKKRVFSEIGHVDGGAGGGSEDENSCSGDRKTPAKNPVVGWPPVGSYRRRNSMSEGPKIYVKVSMDGAPFLRKVDLGLQKGYSELASSLEKLFDCHGIGEALKGVDNSELVPIYEDRDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFDLQPKGSSKGKTK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5140g00003 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 181 IPR003311 GO:0005634|GO:0006355
Pral5140g00003 196 Pfam AUX/IAA family 8 183 IPR033389 -
Pral5140g00003 196 Gene3D - 86 188 - -
Pral5140g00003 196 SUPERFAMILY CAD & PB1 domains 84 176 - -
Pral5140g00003 196 ProSiteProfiles PB1 domain profile. 91 179 IPR000270 GO:0005515
Pral5140g00003 196 FunFam Auxin-responsive protein 86 187 - -
Pral5140g00003 196 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5140g00003 Pral-Chr5140 45485 48152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5140g00003 94 181 B3 DNA Binding Superfamily AT4G23980 44.318 8.86e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5140g00003 AUX_IAA 1.2e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5140g00003 K14484 - qsa:O6P43_027823 227.254