Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5140g00002 ATGTCGCCGGAGAGTACTGGCACCACTCGCTCCACCCAATCCGACGTCACGGAGCTGAACCTGAAGGAGACGGAGCTCACCCTCAGCCTTCCCGGCTCCAATAATATCTCTCGTTCTAAACGTGCCTTCTCAGAAACCACCGTCTTCAGCCCAACGTCGTCGTCAACTAGTACCCCAGCACCAAAGGCACAAGCGGTGGGGTGGCCGCCGGTGAGGGCGAGCCGGAAAAATGTGATGAGGAGCTGCAAGTACGTGAAGGTGGCGGTGGACGGAGCTCCGTATCTGAGGAAGGTAGATCTTGAGAAGTATGAGAGCTATGATCAGCTGCTCACGGGTTTAGAGGCCATGTTTGGATCCTTGACAATTCGCAATCATTTGAATGAGAGGAAGAAGATGATGGACCTTGGGAATGGGGCAGAGTACGTGCCCACATATGAGGACAAAGACGGTGACTGGATGCTCGTCGGAGATGTACCTTGGAAGATGTTTGTTGAATCCTGCAAAAGAATCAGGTTGATGATAAAATCAGAGGCCACTGGCTTAGAGATTCGAAGAACAGAGTTGAAGCTGGAAGAGAAAACGAGTGGCAATTAA 594 0.5168 MSPESTGTTRSTQSDVTELNLKETELTLSLPGSNNISRSKRAFSETTVFSPTSSSTSTPAPKAQAVGWPPVRASRKNVMRSCKYVKVAVDGAPYLRKVDLEKYESYDQLLTGLEAMFGSLTIRNHLNERKKMMDLGNGAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMIKSEATGLEIRRTELKLEEKTSGN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5140g00002 197 ProSiteProfiles PB1 domain profile. 82 177 IPR000270 GO:0005515
Pral5140g00002 197 MobiDBLite consensus disorder prediction 1 68 - -
Pral5140g00002 197 Gene3D - 77 187 - -
Pral5140g00002 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 179 IPR003311 GO:0005634|GO:0006355
Pral5140g00002 197 FunFam Auxin-responsive protein 77 185 - -
Pral5140g00002 197 Pfam AUX/IAA family 80 182 IPR033389 -
Pral5140g00002 197 SUPERFAMILY CAD & PB1 domains 74 174 - -
Pral5140g00002 197 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5140g00002 Pral-Chr5140 36987 38421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5140g00002 60 197 B3 DNA Binding Superfamily AT3G61830 31.690 2.56e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5140g00002 AUX_IAA 1.6e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5140g00002 K14484 - gmx:100500488 221.861