Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5139g00012 ATGGGAGGAGGTTTAGGAGACCCACCTTACTCAGAATCCAAGACTGCATGTAGTAAAACAGCCTCCGATCGCTCTTCCGGTTTCGCTGAACGCTATTTCTCCCATTTCAGATTCTCGGCAAAGCCCTGGCTTTTCCGTCTTCCTGCATTGTCAAAGGCCGAACCCAAGAGGGAAATGACGAGAAAGAAGATAGAGATAAGGAAGATCGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTCTGTGATGCTGAGATTGGTCTCATCGTCTTTTCTTCTACTGGAAAACTCCATGACTATGCAAGCACAAGGTCACTTCCTTCTCTCTCCAAATTTGCTTCATCTATAAAAACCAGGATTAGTTTTTTTAGGTGA 420 0.4429 MGGGLGDPPYSESKTACSKTASDRSSGFAERYFSHFRFSAKPWLFRLPALSKAEPKREMTRKKIEIRKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLHDYASTRSLPSLSKFASSIKTRISFFR 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5139g00012 139 ProSitePatterns MADS-box domain signature. 61 115 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 SMART madsneu2 59 118 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 68 115 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 CDD MADS_MEF2_like 61 118 IPR033896 GO:0000977|GO:0045944
Pral5139g00012 139 Gene3D - 71 135 IPR036879 GO:0003677|GO:0046983
Pral5139g00012 139 ProSiteProfiles MADS-box domain profile. 59 119 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 PRINTS MADS domain signature 61 81 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 PRINTS MADS domain signature 96 117 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 PRINTS MADS domain signature 81 96 IPR002100 GO:0003677|GO:0046983
Pral5139g00012 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 61 124 - -
Pral5139g00012 139 SUPERFAMILY SRF-like 59 129 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5139g00012 Pral-Chr5139 136123 139650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5139g00012 59 132 MADS-box Gene Family AT2G14210 63.514 7.43e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5139g00012 SRF-TF 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5139g00012 - - pcin:129299892 115.931