Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5139g00011 ATGACAAGAAAGAAGATAGAGATAAAGAAGATCGATAACATATCAGCAAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAACTAGGGAACTTGCTACGCTCTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGCAAGCTCTACGACTATGCTAGCTCAAGTATGCAGAAGATAGTTGAAAGACATGGTATCCATTTAGACATGCAAAGATCAGATCAACCTTGTATTGATTTGCAGTTAATTGAACGAAGTGACGACATATATAGGCTGAGCCATGAAATAGCAATAAAGACCCATGAACTGAGGCAGTTGAATGGAGAAGAGTTGCAAGATTCAACAGTTCAAGAATTACAAAAACTTGAGGAACTGCTTGAAAGGGGTTTGATGCGTGTTTCAAAGGCAAAGGATAAAGCAATTGTAAATGAGACCTTCGAACTCAAGAGCAAGGGAAAGAAACTGATGGGAGAGAACAAGAGATTGAAACAGGTTACACATGAACAAGGGCAATCATTTGACTCAGTGGATTTGTCCAGCTCATCCTCTAATATTCCTCAACACTTCAATGATTTTGATACCTCTCTCAAGTTGGGGTTTTCTTGA 621 0.3945 MTRKKIEIKKIDNISARQVTFSKRRRGLFKKTRELATLCDAEIGLIVFSSTGKLYDYASSSMQKIVERHGIHLDMQRSDQPCIDLQLIERSDDIYRLSHEIAIKTHELRQLNGEELQDSTVQELQKLEELLERGLMRVSKAKDKAIVNETFELKSKGKKLMGENKRLKQVTHEQGQSFDSVDLSSSSSNIPQHFNDFDTSLKLGFS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5139g00011 206 Pfam K-box region 91 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5139g00011 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral5139g00011 206 Coils Coil 124 144 - -
Pral5139g00011 206 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Pral5139g00011 206 MobiDBLite consensus disorder prediction 173 190 - -
Pral5139g00011 206 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5139g00011 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pral5139g00011 206 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral5139g00011 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 MobiDBLite consensus disorder prediction 168 190 - -
Pral5139g00011 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5139g00011 206 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5139g00011 Pral-Chr5139 122521 130351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5139g00011 1 205 MADS-box Gene Family AT2G22540 46.414 5.08e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5139g00011 K-box 8.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5139g00011 - - qsu:111985104 201.83