LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5139g00010	ATGACAAGAAAGAAGATAGAGATAAAGAAGATCGATAACATATCAGCAAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAACAAGGGAACTTGCTACGCTCTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCTACGACTATGCTAGCTCAAGGCAGTTGAATGGGGAAGCGTTGCAAGATTCCACAGTTCAAGAATTACAAAAACTTGAGGAACTGCTTGAAAGGGGTATGATGCGTGTTTCAAAGGAAAAGGATAAAGCAATTGTAAATGAGGCCTTCGAATTCAAGAGAAAGGTTACACATGAACAAGGGCAATCATTTGACTCAGTGAATTTGTCCAGCTCATCCTCTAATATTCCTCAACAGTTTAATGATTTTGATACCTCTCTCAAGTTGGGGTTTCCTTGA	438	0.3995	MTRKKIEIKKIDNISARQVTFSKRRRGLFKKTRELATLCDAEIGLIVFSSTGKLYDYASSRQLNGEALQDSTVQELQKLEELLERGMMRVSKEKDKAIVNEAFEFKRKVTHEQGQSFDSVNLSSSSSNIPQQFNDFDTSLKLGFP	145

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5139g00010	145	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	Coils	Coil	76	96	-	-
	Pral5139g00010	145	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	CDD	MADS_MEF2_like	3	60	IPR033896	GO:0000977\|GO:0045944
	Pral5139g00010	145	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Pral5139g00010	145	Gene3D	-	13	82	IPR036879	GO:0003677\|GO:0046983
	Pral5139g00010	145	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	115	-	-
	Pral5139g00010	145	Pfam	K-box region	58	111	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pral5139g00010	145	SUPERFAMILY	SRF-like	2	63	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5139g00010	Pral-Chr5139	84255	92264	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5139g00010	1	145	MADS-box Gene Family	AT4G24540	35.780	5.58e-35	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Pral5139g00010		K-box	1.1e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5139g00010	-		-	pcin:129285578	137.117