Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5134g00061 ATGACGATGCTGGCGAATCATTTCCAGAACGGTATTGAAACGGCGAAGCTCGTTTGGTCGCGAATTCCGAACTCGGACGAATCCCTGGACGCGGACGACACTGTTGGCTTGTTGAAGAAGAGTGATGGAAGCGGCGTTGAGAGCCTTGACTATGAAGTTATAGAGAATTATGCTTATCGGGAAGAACAGGCGCTTAGGGGGAAGCTGTTTGTGGGCTATTTGTTAGTGGTGAAATGGTTCTTTGCTTTGCTCATAGGCATTGGTACTGGAATTGCCGCTGTTTTCATCAATATATCTGTTGAAAACTTCGCTGGCTGGAAGTTTTCATTGACATTTCATATAATTCAGAAATCTTATTTGGCGGGCTTTCTTGTATATGTCCTGATCAACTTGGTTTTGGTCTATTCCTCTGTCTATGTTATCACACAATTTTCTCCAGCAGCAGCTGGATCTGGTATTCCTGAAATCAAGGGTTACCTGAATGGAGCTGATATTCATGGCATCCTTCTTCTCAGAACCTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGTAAAGAAGGCCCTCTTGTGCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTGCCAAGTATCATCTAAATTCGCGATGGTTTCAAGTATTCAAAAGTGATCGAGATCAGCGAGATCTTGTAACCTGTGGCTGTGCGGCTGGAGTAGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTTTTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGAAGTCAACTGATGTGGCGTGTTTTCTTCACTTCTGCCGTTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGCTCCGGTGGATTCATCATATGGGATATATCAGGTGGTCAAGAGGATTATTCATTTGCTGAGTTACTGCCAATGGCTGTTATTGGGGTTATTGGAGGACTGCTAGGAGCCTTGTTTAACCAGCTTACTCTTTATGTGACTTCTTGGCGTCGAAATCATTTACACAAGAAAGGGGGCCGAGTCAAGATCATTGAAGCATGCCTTGTCTCATTGTTAACTTCGGTTATTTCATTTGGTTTGCCGCTCCTAAGAAAATGTAGTCCATGCCCTGAATCTGGTCCTCATTCTGATTCTGTTATTGAATGTCCTCGACCACCTGGAATGTATGGGAATTATGTAAATTTCTTCTGTAGCAAAGACAAGGAATACAATGATCTTGCCACAATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTTAGTGCAAAAACAATACATGAGTACAGTCCCCAAAGTTTATTGACCTTTTTGGTTATGTTTTATACTCTAGCAGTTGTGACATTTGGTACTGCAGTTCCAGCTGGTCAGTTTGTTCCTGGAATCATGATAGGATCAACATATGGACGTCTTGTTGGCATGCTTGTTGTGAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTATTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGAATGACAGTGTCCCTCTGTGTCATTATGGTTGAAATAACAAATAACTTACAACTCTTACCTCTTATTATGCTTGTTCTCCTTATATCCAAGGCTGTTGGTGATGCTTTTAATGAGGGGTTATACGAAGAGCAGGCCCGACTAAAGGGAATTCCATTGCTTGAATCAAGGCCTAAATATGAAATGCGGAATATGACAGCCAAGGAGGCCTGTGGCAGCAGAAGGGTGGTTTCTTTTCCCCGTGTTGTCAAGGTTGCAGATGTAGTTTCCATTTTGCGGAGCAATGATCACAATGGTTTTCCTGTCATTGATCACACAAGAAGTGGAGAATCACTTGTTATTGGATTAGTGCTTCGTAGTCATCTATTGGTAATTCTACAGTCAAAGATTGATTTCCAGCATATTCCTATACCTGGTGATACCAAAGGCGTGGCCAACCCAATAAGGCATCATTCTGATGAATTCACAAAGCCTGTTTCTAGTAAAGGAATCTCTATAGATGATATACATCTAAGTTCAGACGACTTAGAAATGTACGTAGATCTTGCCCCATTTTTGAACCCCTCACCATATATTGTACCCGAGGATATGTCTTTGACAAAGGTCTACAATCTCTTCCGCCAACTAGGTTTGAGGCATTTATTTGTTGTTCCTCGCCCATCTCGTGTTCTTGGTTTGATAACCAGAAAAGATCTGTTGGTTGAGGACTCCGAAAATGTGAATACAATACAGCTCCAGTCAACCAGCATAGTGTCTTTATGA 2334 0.4242 MTMLANHFQNGIETAKLVWSRIPNSDESLDADDTVGLLKKSDGSGVESLDYEVIENYAYREEQALRGKLFVGYLLVVKWFFALLIGIGTGIAAVFINISVENFAGWKFSLTFHIIQKSYLAGFLVYVLINLVLVYSSVYVITQFSPAAAGSGIPEIKGYLNGADIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWFQVFKSDRDQRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISGGQEDYSFAELLPMAVIGVIGGLLGALFNQLTLYVTSWRRNHLHKKGGRVKIIEACLVSLLTSVISFGLPLLRKCSPCPESGPHSDSVIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSPQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLQLLPLIMLVLLISKAVGDAFNEGLYEEQARLKGIPLLESRPKYEMRNMTAKEACGSRRVVSFPRVVKVADVVSILRSNDHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKIDFQHIPIPGDTKGVANPIRHHSDEFTKPVSSKGISIDDIHLSSDDLEMYVDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLVEDSENVNTIQLQSTSIVSL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5134g00061 777 ProSiteProfiles CBS domain profile. 710 767 IPR000644 -
Pral5134g00061 777 PRINTS Plant CLC chloride channel signature 52 60 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5134g00061 777 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5134g00061 777 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5134g00061 777 PRINTS Plant CLC chloride channel signature 426 442 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5134g00061 777 PRINTS Plant CLC chloride channel signature 294 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5134g00061 777 FunFam Chloride channel ClC3 70 387 - -
Pral5134g00061 777 Pfam Voltage gated chloride channel 137 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 FunFam Chloride channel protein 702 776 - -
Pral5134g00061 777 CDD ClC_6_like 47 578 - -
Pral5134g00061 777 Gene3D - 586 763 IPR046342 -
Pral5134g00061 777 Pfam CBS domain 711 758 IPR000644 -
Pral5134g00061 777 Pfam CBS domain 598 650 IPR000644 -
Pral5134g00061 777 SUPERFAMILY CBS-domain pair 583 757 IPR046342 -
Pral5134g00061 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 761 - -
Pral5134g00061 777 SUPERFAMILY Clc chloride channel 56 580 IPR014743 -
Pral5134g00061 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 757 - -
Pral5134g00061 777 Gene3D Clc chloride channel 72 579 - -
Pral5134g00061 777 SMART cbs_1 713 761 IPR000644 -
Pral5134g00061 777 SMART cbs_1 599 651 IPR000644 -
Pral5134g00061 777 ProSiteProfiles CBS domain profile. 596 656 IPR000644 -
Pral5134g00061 777 PRINTS Chloride channel signature 474 494 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 509 525 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 146 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 565 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5134g00061 777 PRINTS Chloride channel signature 527 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5134g00061 Pral-Chr5134 543716 552647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5134g00061 3 773 Ion Channels AT5G26240 83.031 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5134g00061 K05016 - gmx:100811908 1337.4