Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5134g00038 ATGGAAGCGGGCATGAGATCAGCTGGTCCTTCCGGGGTTGTGGTGAAGAGCAGGAACTCCTCGGGATGTTTAATTGTTAGAAAGAAGGGTGATGGGTTGGGTGGTGGATATCGTTCTTCAAGCAGCTCTCGGAAGTTGTACGAATCAAATGTTAGAAAACGGCCTAGTATGGCTCTGAGTGATTCAGAATCAAGCGATGAGTTGCTGGTGCCACCAACTGGAAGGATTGGTCCTGAGACTTTTCGAGCCTTTAATGGATTGACTGCTTCAGAGCGTGGTATAGTGGAAGGCAATGAAATTGGTAGAAACAGGGACAGAATGATGCAAATCAGGCATAATGAGGATGCTATGATTGAGAGGAATGGTTTGGGGCAGAGGGAAAGAAAGAAAACTAAAATAGAAGCGTTTGATTTTGATGAACATGACGGTATGGGCGTGGAAAAGATGAAAAGGAGGGTTTTTTATGACAATGATGGAGTTGGTTTTGGGGGACGAAGGCTTATGGGACCAATGCATGCCACAAAAAGTGGCTTTGAGAGTAAATTTGAAACAGGATCTAGCAGACACAATCTTGGTAACAGAAACAACTCCTACTATGATGGGCAAAGTGGATTGTGTGTGGGAGATAATGTTGACTCCAGCAGGTTCCATGTGAATAGGGATGATGCTCACCTACGTCTACCCTTGCTGAGAGACAAGTTTAAATCAAACGAAACCATCAGGGTTCAGGGGAAAAATGGTGTTCTAAAGGTTATGATTAATAGGAATAAGGTGGGTGGCCCATCAGACTACTATAATCACATCAAACCTATAGAAGACAGACAGCAGAATCTGCAGATTGAGGCCCCTATGCAGCGGAAAATTCCAGTCCATTCATCATACTCAGAAACAAAAGTCATTGAGAAGCCAGGTTTAGTTGTTAGGCCTGAGAAAAAACGGATGGCATCAAGAAAATTTTTGTCAGTTAAGGACAGCAAGGGATGTGATTCGGACACTGAGGACACTGACAGACCATTGAATCCAGCACTAGAAAATACTAAACCCTTCAAGTCTGTGAAGAGAACAGGTTCTGAGGATGAAAAGACTCCTTTACGTGAGAAGGTCCCAACTACAATAATGAAAGAAGGAAAAGAAGGAAAAGTAAGGCGTGGGAGTGGTACAGAAAAACAGAAGCTTCGAGAAAAAATAAGGGAGATGCTGCTGAGTGCAGGTTGGACTATAGATTATCGGCCTCGAAGGAACAGAGACTATCTAGATGCAGTCTACATCAATCCAGGGGGTACAGCCTACTGGTCAATAATCAAAGCATATGATGCTCTTCAAAAGCAATTGAATGGTGATGATAATGAGGCCAAGCCCGTGGTTGATGGTTCTTCCTTTGCTCATATCTCAAACGAAGTGCTGAGTCAATTGACAAGGAAAACTCGGAAAAAGATGGAAAAAGAATTGAAGAAGAAGCAAAGAGATGGTAGTGAGAGTGATAGTGAAATGGAACCCAACCTTAAAAGATCTGCCAACTTCAGGCATGATATGCATAGCATGGATAGTGATAGCAATGGAGAGAAATTAAGCTCTTTTATGAAGCGGGGAAGTAATTCAATGAAAAATAAGACATTTGAAAATGCTGCCTGTGTTAGTTTTAAATCCCAGAAATCAACCCCTCATTTACATGATGGAACTGAAAATTCTTTGTCTGGATGTGATCCTCATCAGCCACATGGGAGGAAAAGTAGAAAACATGGAAGATGTACTTTGTTAATCCGTGGTTCTAATAAGGGTGCGAATTCAGAATCTGATGGCTTTGTTCCATATACAGGCAAAAGAACGGTGCTTTCCTGGTTGATTGACTCTGGGACTGTTCAGTTGAGCCAAAAGGTTCAGTACCGCAAACGAAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGATGTTGCAGCAAAATCCTTACAGTTTACAAGTTTGAGATTCATGCAGGTAGCAAATTGCGCCAGCCATTTCAAAACATATATTTGGACTCAGGAGTGTCACTTCTACAGTGCCAAATAGATGCGTGGTGGAGACAGGAGAATTCAGAGAAAATTAGTTTTCATTCAGTTGATGTTGATGGCAATGATCCAAACGATGACACTTGCGGTATTTGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGCCCATCAACATTTCATCAAAGCTGCTTGAATATACGGATGCTTCCTCTTGGTGAGTGGCATTGTCCAAAGTGCACCTGCAAATTTTGTGGAACAGCCAATGGGATTGTTAAAAATGGAGATGGTGCTACTAGATATGCTCTTGTCACTTGCAACTTATGTGAGAGGAAATACCATGAATCTTGCGCTAAGGACATGGATGCTGTTTCTATCAACCCCAATGCCAATACGCCAGGCTTTTGTTTTTGTGGAAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTAGGTTCCAAGCATGAGCTAGAGGCAGGCTTTTCATGGTCTCTTATTCATAGGGCAGATGAAGACTCAGAGGCTGCTGGTAGAGGAATTTTTCAAAGGGCGGAATGCAACTCCAAGCTAGCAGTTGCATTGACTGTGATGGATGAGTGCTTTTTACCCATTGTTGACCGGAGGAGTGGCATCAATGTAATTCATAACGTTCTATATAATAGTGGATCAAACTTTAGTAGGTTGAATTATAGTGGCTTTTACACGGCTATTCTGGAGAGGGGCGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGGTTAAGTTGGTGGAGATGCCATTTATTGGAACTCGCCATATATATAGGCGTCAAGGGATGTGCCACCGGCTTTTTTCTGCCATTGAATCAGCCCTCTGCTCTATGAAGGTTGAGAAAATGGTTATTCCAGCAATTGCTGAACTCACAAAAACATGGACGGCAACTTTTGGCTTCACACCTCTTGAAGAATCACTCAGGCAAGAAAGGAGGTCATTGAATATGCTAGTCTTCCCTGGTGTAGATATGCTGCAGAAGTTGCTGGTGGAGCAAGGAAACTTCGAAGGGGACTCAACTTCCACAGGTGCTGATAAAATGGACCATGGAGAGAAAGTTTATACTAATCCAAAATTGGCTACTAGGTCATTGGCTAATTCCTCATCTCATCCAGATCTTGACGGAAACAGTGATGCTGGTTTGGATCCTCTTAATGAGATAAAAGACGAATGCAGTGATGCTTCATTAGATCAAATAAATCAAGTTTTGTCCGACAAGATTGCATGTTCCAAATCCTGTTCTGAGGATAGGCTATCTGACTCAGCTTCAGATAGATGTTCTTCTCCCTCTAGTACCAGTCATGATGTGCCGGAGATGGAAAATAAAGCGGTGGCTTCTCCATCAATGAAAGATAATTTGCGTATGTCTGCCAACTGTAAGGGCAATTCACTGAATGGCACTTCTATTGATATGTATCCATCAGATGCTCCGGATGGCCCTGAAAATTGTACTTTGGTTCATAGAGCTGCTACTTCTGATCCTAATTCAACAAAAAACCTGGTTGAACCTGTTTCTGATTGGGAAGGTCATTTGCCTACCGCTATAAATGGTGATTCATCTGAGCTTGGGATGAACCTGATGTTGGATTCTCAAATGATGGATAATACTACTTCTTTCAGGGAGGCTGGCATGAATAATTTTCAAGAGGTTCATGAAGCTGCTCCTTCAGGGAGTTTGTCCGAAGAGGATGTTACCAACAACAACATTGAGAATACAGATGTGTCAGATTCTGAACTCAACCATGCAGACAAGAATGAAACTGAGTATGAAGGGGAAAGAAATTTATATGTGGACACCGAAGTTGCTTCAAAAGAAATGCAATTTTATGGAAGTGGAATTAATGCATCCAGTGATAGTTCTGAGACTGATTCGGAGTAA 3945 0.4226 MEAGMRSAGPSGVVVKSRNSSGCLIVRKKGDGLGGGYRSSSSSRKLYESNVRKRPSMALSDSESSDELLVPPTGRIGPETFRAFNGLTASERGIVEGNEIGRNRDRMMQIRHNEDAMIERNGLGQRERKKTKIEAFDFDEHDGMGVEKMKRRVFYDNDGVGFGGRRLMGPMHATKSGFESKFETGSSRHNLGNRNNSYYDGQSGLCVGDNVDSSRFHVNRDDAHLRLPLLRDKFKSNETIRVQGKNGVLKVMINRNKVGGPSDYYNHIKPIEDRQQNLQIEAPMQRKIPVHSSYSETKVIEKPGLVVRPEKKRMASRKFLSVKDSKGCDSDTEDTDRPLNPALENTKPFKSVKRTGSEDEKTPLREKVPTTIMKEGKEGKVRRGSGTEKQKLREKIREMLLSAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNGDDNEAKPVVDGSSFAHISNEVLSQLTRKTRKKMEKELKKKQRDGSESDSEMEPNLKRSANFRHDMHSMDSDSNGEKLSSFMKRGSNSMKNKTFENAACVSFKSQKSTPHLHDGTENSLSGCDPHQPHGRKSRKHGRCTLLIRGSNKGANSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVYKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWWRQENSEKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIRMLPLGEWHCPKCTCKFCGTANGIVKNGDGATRYALVTCNLCERKYHESCAKDMDAVSINPNANTPGFCFCGKECKELFEHLKKYLGSKHELEAGFSWSLIHRADEDSEAAGRGIFQRAECNSKLAVALTVMDECFLPIVDRRSGINVIHNVLYNSGSNFSRLNYSGFYTAILERGDEIISAASIRFHGVKLVEMPFIGTRHIYRRQGMCHRLFSAIESALCSMKVEKMVIPAIAELTKTWTATFGFTPLEESLRQERRSLNMLVFPGVDMLQKLLVEQGNFEGDSTSTGADKMDHGEKVYTNPKLATRSLANSSSHPDLDGNSDAGLDPLNEIKDECSDASLDQINQVLSDKIACSKSCSEDRLSDSASDRCSSPSSTSHDVPEMENKAVASPSMKDNLRMSANCKGNSLNGTSIDMYPSDAPDGPENCTLVHRAATSDPNSTKNLVEPVSDWEGHLPTAINGDSSELGMNLMLDSQMMDNTTSFREAGMNNFQEVHEAAPSGSLSEEDVTNNNIENTDVSDSELNHADKNETEYEGERNLYVDTEVASKEMQFYGSGINASSDSSETDSE 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 551 579 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 471 524 - -
Pral5134g00038 1314 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 1 20 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 471 517 - -
Pral5134g00038 1314 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 313 340 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 1112 1126 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 1106 1136 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 551 567 - -
Pral5134g00038 1314 PANTHER PHD FINGER PROTEIN 12 374 1176 IPR042163 GO:0003714|GO:0045892
Pral5134g00038 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 769 IPR013083 -
Pral5134g00038 1314 Coils Coil 469 489 - -
Pral5134g00038 1314 Pfam PHD-finger 716 758 IPR019787 -
Pral5134g00038 1314 Pfam Tify domain binding domain 638 688 IPR032308 -
Pral5134g00038 1314 CDD PHD2_CHD_II 716 755 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 1265 1283 - -
Pral5134g00038 1314 SMART PHD_3 757 818 IPR001965 -
Pral5134g00038 1314 SMART PHD_3 715 756 IPR001965 -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 1257 1283 - -
Pral5134g00038 1314 SUPERFAMILY FYVE/PHD zinc finger 705 762 IPR011011 -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 313 363 - -
Pral5134g00038 1314 MobiDBLite consensus disorder prediction 25 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5134g00038 Pral-Chr5134 328143 336556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5134g00038 1 1054 PHD Transcription Factor Family AT4G14920 48.093 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5134g00038 TDBD 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5134g00038 - - ccaj:109804483 1514.98