Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5134g00008 ATGGACACACCAGAGAGGAACCAGATCGGAACCCCCATCTCCAAATTTGAGGATTCACCCGTCTTCAACTTTATCAATAGTCTTTCTCCTATAAAGCCTGTTAAGTCTGTTCATAGTATTCAGACTATCAATTCACTCAGTTTTTCATCTCCTCCATCCGTGTTTACATCACCCCATGTCAGCTGTCACCGGGAATCTAGATTTCTCAGGAGGCATAACGTTATAGATGCATCAAAGCATAAGGTTTTGTCTGAAGATGGGAAAAAAATATGTTCAAGTGAAGAAGCTCTTGCAGATTCTACTCATACATATCATAATTCAAGTGAGCTACAAGGAAATGCTGATCAAGGGATTTCCCTGGAAGATTCAACAATTGAGCCATCTAATGAGCACTCAGACTTTCCAATTGAGCTACCACAAACCTTAAAATATGATTGTGGTAGCCCGGCATGTGATCCTCCACCTGGTGGTGATGAGACAAATTCTCTTCTGGATTTGTCAAGTAAGGCAGCATCAGATGTTGCGTATGTTGATGAAGCCTGTAAAAAAAGTTCACCCGAGTCTGAAGTGCTACTTCCAGGAATATGTCAAGCTGAGCCAAGAATTGGAGGCCCAGAGTGTGACTGGGATGGTTTACTTTCAGATGCTACTGATCTATTAATTTTCAACTCTCCTAACGAAAGAGAAGCTTTAAAGGGTTTAATGCAAAAATCATTTGACCCCACAGGACGGTTTAGCAATTTTATGTCTCAGTTGCCACAAACTACCTTAAGTCATGGTGAGAGAATGCGAATTTTTGATCCAGCTACTTCTGGTTCAGAACATGAAACTGAAGATCATCCTTCTCAGCCAGAAGAAGTCATCGACAATGATCAGGCACAGGACAATCTTGCTAACGCTGCTGGGATGGGTGGTAATCCTGATAATACGTTGGATAATCAGCTTGTTTCAATAACACGCCATGGCATACGAAGGCGTTGTCTAGATTTTGAGATGGTTGGGGGAAGAAGGAAGAACTCCAATGATGGTTCAAATAACAGTAGTTCTAGCACATTACAATCTGACGAGAGAAATGTTGCTAATGATAAGCAGCTTCTTCCTGCAAAACGCAACGGTAATTCACAGAAGTGCATTTTGCCTGGAATTGGCTTACACCTGAATGCTCTTGCGAGTATAAAAGATTTCAAAAGCTTAAAAGTTGAAAATACATCTTCTGGAAGACAACTCAGCCTGCCAAGCCCTGCCTTGCAACAATCCTCAAGCCAAGAACATAGTCTAGCATTGGTGCCTTTATCAACCGAAGCAGATTCAGATCTGCCAGACAATGGGATTCAGCCTGCTGAAGATTGTTCCCAGCCCTCAGGATATGCCATTGATGAAGATTTCAACCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTTGGAGCCAGCTGGGGATGGTGAATCTTGTAAGCGTTGTAATTGCAAGAAATCCAAGTGTTTGAAGCTCTACTGTGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCTTGCTCTTGCCAGGATTGCTTCAACAAGCCTATTCATGAGGATACTGTTCTTGCAACTCGCAAGCAGATTGAGTCTCGTAATCCTCTAGCCTTTGCTCCTAAAGTCATTCGAAGCTCTGATTCTGTACCTGAAATTGGGGATGATCCCAACAAAACTCCAGCTTCTGCACGGCACAAAAGAGGATGTAACTGCAAGAAATCAAGCTGCTTAAAGAAATACTGTGAATGCTATCAGGGCGGTGTGGGTTGCTCCATTAGCTGTAGATGTGAGGGATGCAAGAATGCGTATGGTAGAAAGGATGGTTCCATTCCTATTGGAATAGAGGCTGAGCCAGAAGAAGAAACAGAACCATCTGAGAAGGCTGTGACTGAAAAATCCTTACAAAAATCCGAGATCCAGAACAACGAAGAGCATCTGGAGTCCACACTTCCTACAACACCATTACGAATGTGCAGACCATTGCTTCCTCTATCCTTTTCATCAAAGGGAAAACCACCACGATCCTCTTTCATCACTACCATACCAGCTTCTGGATTGTACGCCAGCCAGAAACTTGGGAAACCCAGCATCCTTCGGTCTCAACCCAAGTTTGAAAAGCAGTTTAAACCCGTTTCCAATGACGAAATGCCGGAGGTTCTCCGGGGTGACGGGTCTCCTAGCATCAAGACATCATCTCCTAATGGCAAGAGGATCTCCTCCCCTAACTGTGACTTTGGGTCATCTCCCAGTCGCAGAAGTGGCAGGAAGTTGATATTACAATCCATCCCATCATTTCCTTCTCTCACTGCTCCTCACCTTTAG 2331 0.4367 MDTPERNQIGTPISKFEDSPVFNFINSLSPIKPVKSVHSIQTINSLSFSSPPSVFTSPHVSCHRESRFLRRHNVIDASKHKVLSEDGKKICSSEEALADSTHTYHNSSELQGNADQGISLEDSTIEPSNEHSDFPIELPQTLKYDCGSPACDPPPGGDETNSLLDLSSKAASDVAYVDEACKKSSPESEVLLPGICQAEPRIGGPECDWDGLLSDATDLLIFNSPNEREALKGLMQKSFDPTGRFSNFMSQLPQTTLSHGERMRIFDPATSGSEHETEDHPSQPEEVIDNDQAQDNLANAAGMGGNPDNTLDNQLVSITRHGIRRRCLDFEMVGGRRKNSNDGSNNSSSSTLQSDERNVANDKQLLPAKRNGNSQKCILPGIGLHLNALASIKDFKSLKVENTSSGRQLSLPSPALQQSSSQEHSLALVPLSTEADSDLPDNGIQPAEDCSQPSGYAIDEDFNQNSPKKKRRKLEPAGDGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSIPIGIEAEPEEETEPSEKAVTEKSLQKSEIQNNEEHLESTLPTTPLRMCRPLLPLSFSSKGKPPRSSFITTIPASGLYASQKLGKPSILRSQPKFEKQFKPVSNDEMPEVLRGDGSPSIKTSSPNGKRISSPNCDFGSSPSRRSGRKLILQSIPSFPSLTAPHL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5134g00008 776 MobiDBLite consensus disorder prediction 463 484 - -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 626 646 - -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 338 358 - -
Pral5134g00008 776 SMART CXC_2 481 522 IPR033467 -
Pral5134g00008 776 SMART CXC_2 567 608 IPR033467 -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 728 770 - -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 406 426 - -
Pral5134g00008 776 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 772 IPR044522 GO:0003700
Pral5134g00008 776 MobiDBLite consensus disorder prediction 334 358 - -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 620 655 - -
Pral5134g00008 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Pral5134g00008 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 605 IPR005172 -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 455 484 - -
Pral5134g00008 776 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Pral5134g00008 776 MobiDBLite consensus disorder prediction 702 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5134g00008 Pral-Chr5134 84337 89675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5134g00008 16 775 CPP Transcription Factor Family AT4G14770 44.716 5.44e-169 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pral5134g00008 TCR 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5134g00008 - - gmx:100804447 981.089