Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5134g00003 ATGGCTTCCACTTCTTCTACAAAATCAACCAAAAACCCAGGCAAAGGAAGGCGCAAGATCGAGATCAAGAAAGTGGAGCAAACCAGCAAGCGTTTCGTCACCTTCTCGAAACGCAAGTTGGGTCTTTTCCGCAAAGCCGCCGAGCTTTCCCTCCTCTGTAACTCTGAAATCGCCGTCGTAGTGTTCTCTCAGCACGGCAAGGTCTACTCCTCCGGCTTCCCAGACCCCGACTCCGTCATCCGCCGCTACCTCTCCGGCACATTCTCTTCCTCCTCGGACCCCGCATCGGTTGGTCATGAATGGGAGGAAGAATCGGCGGTATCGTCGCTGAGGCGGGAATACGAGGAGGCAATGAAGGTACTGGACGACGAGAAGAAATCTCTGAACGCAATGGCTGATATTTCCGGGTCGAGTGCTGGTCCCGGGTCTTGGTGGAACCGCTCGGTTGGGGAGATGGGTTTGAAGGAAGTTGTGGAGTTCAAGGAAAGAATTGAACAGGTAAAAAAGAATCTGGTTGCTGCGGTGGAGAATAAGAAGAAGGAGACGGCGGCTTCGCTGGCCAGTTCCTCGTCGGTGCCGCCGCTGCAGACGACGGCCGAGGAGTGTTTGTCCACCTCTCTGATGAATGACGATGTGGTTGCGACTGATCAAGGGTGGGATTGGGATTGGGATTCCTGGAATGACATCACAATCAGTAATGATTCTTCCATGGTTTGGAATACTGATCTTGGACAGTCTTATTATTAA 747 0.5248 MASTSSTKSTKNPGKGRRKIEIKKVEQTSKRFVTFSKRKLGLFRKAAELSLLCNSEIAVVVFSQHGKVYSSGFPDPDSVIRRYLSGTFSSSSDPASVGHEWEEESAVSSLRREYEEAMKVLDDEKKSLNAMADISGSSAGPGSWWNRSVGEMGLKEVVEFKERIEQVKKNLVAAVENKKKETAASLASSSSVPPLQTTAEECLSTSLMNDDVVATDQGWDWDWDSWNDITISNDSSMVWNTDLGQSYY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5134g00003 248 MobiDBLite consensus disorder prediction 1 21 - -
Pral5134g00003 248 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Pral5134g00003 248 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pral5134g00003 248 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pral5134g00003 248 SUPERFAMILY SRF-like 16 86 IPR036879 GO:0003677|GO:0046983
Pral5134g00003 248 Gene3D - 28 126 IPR036879 GO:0003677|GO:0046983
Pral5134g00003 248 Coils Coil 107 131 - -
Pral5134g00003 248 Coils Coil 157 181 - -
Pral5134g00003 248 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pral5134g00003 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Pral5134g00003 248 PANTHER MADS BOX PROTEIN 17 171 - -
Pral5134g00003 248 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5134g00003 Pral-Chr5134 31691 32437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5134g00003 15 176 Type I MADS-box Gene Family AT5G60440 38.037 3.77e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5134g00003 SRF-TF 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5134g00003 - - pcin:129319416 329.717