Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5128g00004 ATGAGGATCACTGTAATGACTGCTGATGAACAAATACTTTCGTTGGATGTTGATCCCCATGAATCTGTGGAAAACGTCAAGGCATTGCTTGAGGTAGAAACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTATAATGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTCTCGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTTCTGTTTCTTCTGGTGCATCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTTCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATAGGTCAGCTCTTTCAGAATGATCCAGAGTTGGCACAAGCTATTCTAGGAAGTGATCTTAACAGAATACAGGAGATTCTACGAGCACGTCATCAACAGAGAGCTGAATTACAGCGTCAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAACATAATCCCGAAGCCTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAAGCATTTGTTGATAGCGGAGCCCAGTCTACGATTATATCAAAAAGCTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTAGACCAGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATACATGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCATTTTTAGTGCTCGATGCTCCTAACATGGAGTTCCTTTTTGGGCTGGATATGCTCCGAAAGCACCAGTGCATTATAGATTTAAAAGACAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTATGCTAAGGAAGCATCCAGCTCAGGTGCCCCAGCAACAGGACCAACAGATCGGAGTGGTGCTGCACCAAAAGGAGGCCAGTCTTCAGGAGGAGCTTCTGGTGGCACTTCTCAGGAGGGTGATTTTGAAGCAAAAGTAGCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGGTACAAGCTCTTAAATTATTCAATGGCAATGAGGATCAAGCTGCCGGGTTTCTTTTTGGGGGTTTCTAG 1230 0.4358 MRITVMTADEQILSLDVDPHESVENVKALLEVETQVPLQQQQLLYNGREMSNSEKLSALGVKDEDLVMMVSSVSSGASANDLGFNPDGSAVNPASFQQHIRQDSNLIGQLFQNDPELAQAILGSDLNRIQEILRARHQQRAELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDAPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEASSSGAPATGPTDRSGAAPKGGQSSGGASGGTSQEGDFEAKVAKLVELGFGREAVVQALKLFNGNEDQAAGFLFGGF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5128g00004 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pral5128g00004 409 Pfam Ubiquitin family 3 71 IPR000626 GO:0005515
Pral5128g00004 409 Coils Coil 126 149 - -
Pral5128g00004 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 408 IPR015940 -
Pral5128g00004 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Pral5128g00004 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Pral5128g00004 409 FunFam DNA damage inducible 1 homolog 2 174 321 - -
Pral5128g00004 409 Pfam UBA/TS-N domain 371 404 IPR015940 -
Pral5128g00004 409 CDD UBA_scDdi1_like 371 406 - -
Pral5128g00004 409 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Pral5128g00004 409 MobiDBLite consensus disorder prediction 330 367 - -
Pral5128g00004 409 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Pral5128g00004 409 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Pral5128g00004 409 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Pral5128g00004 409 SMART uba_6 370 407 IPR015940 -
Pral5128g00004 409 CDD Ubl_Ddi1_like 1 69 IPR033882 -
Pral5128g00004 409 Gene3D Acid Proteases 175 321 IPR021109 -
Pral5128g00004 409 Gene3D - 1 81 - -
Pral5128g00004 409 Gene3D - 342 408 - -
Pral5128g00004 409 SUPERFAMILY UBA-like 363 408 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5128g00004 Pral-Chr5128 44794 51438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5128g00004 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 25.974 3.46e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5128g00004 K11885 - qsu:112012964 667.537