Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5127g00006 ATGGGTCGTATTCCATGCTGCGAGAAGGACAACGTTAAAAGAGGACAGTGGACACCTGAGGAAGACAACAAGCTCTCTTCCTACATTGCTCAACATGGTACTAGGAATTGGCGCCTTATTCCTAAAAATGCTGGCCTCCAGAGGTGTGGAAAGAGCTGCAGGCTCAGGTGGACTAACTACCTCCGTCCTGATCTCAAGCATGGTCAGTTTTCAGACTCAGAAGAGCAAACCATTGTGAAGCTCCACTCTGTTTTTGGTAACCGATGGTCACTAATAGCAGCCCAGCTCCCAGGCCGCACTGACAATGACGTCAAAAACCACTGGAACACCAAGCTGAGGAAGAAACTTTCAGGCATGGGAATCGACCCTGTCACCCACAAGCCATTCTCCCACCTGATGGCCGAAATTGCAACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCTCTCGGCTGCTTCAAAGACGAGGTGCTTCATCTTCTTACTAAGAAGAAGATTAACTTCCAGGCTCAAAACCCCACTGAACAAATGGGGAATAACATTAACATTACCTCTTTCATGAACTATAAACCTGATGAGAAGCAAGACACTTCTGAGAAGATTAAGTTTGGGTTATCCAAGGTTATGCAAGAATCTGAAATGATAACCCCAAATAAACCGTGGGACTGCACTGCAACTACAACAGCCAGTTTTGAGGGGACTTGCAGTGTCTTTCCTACAGTGACTGGGTTTCAATTTAGTCCTGTGTCGTTTGCCAACGATGGGGATGGATCACCATGGAGCCAAAGTGTGTGTACCGGAAGTACATGCACAGCCATGGATCAACAAGGCCAGTTACATGAAAAACTTCAAGAAGAAAATGAAGATGATTCCAATACTGCAAAAGAAATTAGAAGTGCATCCGATTTATTCAACGCCCAGTGTGTTTTGTGGGATTTACCATCAGAAGATCTGATTAATCCCATGGTATAA 981 0.4577 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLRKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKKINFQAQNPTEQMGNNINITSFMNYKPDEKQDTSEKIKFGLSKVMQESEMITPNKPWDCTATTTASFEGTCSVFPTVTGFQFSPVSFANDGDGSPWSQSVCTGSTCTAMDQQGQLHEKLQEENEDDSNTAKEIRSASDLFNAQCVLWDLPSEDLINPMV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5127g00006 326 Gene3D - 69 128 - -
Pral5127g00006 326 FunFam Transcription factor RAX3 7 67 - -
Pral5127g00006 326 Coils Coil 283 303 - -
Pral5127g00006 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5127g00006 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5127g00006 326 CDD SANT 70 112 IPR001005 -
Pral5127g00006 326 CDD SANT 17 61 IPR001005 -
Pral5127g00006 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral5127g00006 326 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pral5127g00006 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5127g00006 326 PANTHER F14D16.11-RELATED 1 323 - -
Pral5127g00006 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5127g00006 326 SMART sant 66 114 IPR001005 -
Pral5127g00006 326 SMART sant 13 63 IPR001005 -
Pral5127g00006 326 Gene3D - 14 66 - -
Pral5127g00006 326 FunFam transcription factor MYB80 69 129 - -
Pral5127g00006 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5127g00006 Pral-Chr5127 33436 35964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5127g00006 1 171 MYB Transcription Factor Family AT5G56110 88.889 4.09e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5127g00006 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5127g00006 K09422 - gmx:100800764 530.791