Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5126g00051 ATGCAGTCCAAGTCTGAAACTGCAAATCAACTAAGGACTGATCAGCATTCTTTTCCAGCGAACAATGTTTATTCTGAGCCTTGGTGGCGTGGTGTTGGGTACAATCCCGTGAATCAAGCAATGACCGGGGCAAATGCATCGAATTCATCCTCACTGGAATGCCCTAATGCTGAATCTGAATCCAATGATGGTCAATCTTTGTCCAATAGTGGTTTGAATGAGGAAGATGATGATGCCACTAAAGAATCACCAGCCGGTGCTCCTAATCAATCAGGAAATTACGTTCAAGAACACCAGGGCATGCAGCATGCTTCGTCGTCTGCACCATCCATGCGAGATGAATGCTTCACACAGGCTCCACAGCTCGAACTAGTTGGTCATTCAATAGCATGTGCTTCACATCCTTATCAGGATCCATATTTTGCTGGAATGATGGCGGCTTATGGTCCCCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAACCTGTTTATGTAAATGCGAAGCAATACCCAGCAATTCTTAGGCGCAGACAGGCTCGAGCAAAGGCAGAGCTGGAAAAGAAGCTAATAAAAGCTAGAAAGCCATACCTTCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCAAGGGGTACTGGAGGTCGCTTTGCAAAGAAAAATGATGCCACTGATGGTTCAAACCACTCTGGCAAAGACAAGGATGTGGGATCTGGTCCAGTGGTATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACATGGAACTCTCCAAATGTGCAACAAGAGGCCAGAGGATATAAACTTCCTGACCAATATGATGCGCACAACTACTCGAACAATAATGGCCCTTATCGTAATCATAGTGGCTTGCAATCTTCCACTTATCATTTGCACTCAGGTGAAAGAGTCGAGGAAGGGGACTGTTCAGGACAACAACGGGGAAGTATCTCTTCTGAACACACTTCACAGAGGCGTCTTGCAATTCAGTAG 1056 0.4631 MQSKSETANQLRTDQHSFPANNVYSEPWWRGVGYNPVNQAMTGANASNSSSLECPNAESESNDGQSLSNSGLNEEDDDATKESPAGAPNQSGNYVQEHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGMMAAYGPHQLGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELEKKLIKARKPYLHESRHQHAMRRARGTGGRFAKKNDATDGSNHSGKDKDVGSGPVVSSQSVSSSGSEPLPCESAETWNSPNVQQEARGYKLPDQYDAHNYSNNNGPYRNHSGLQSSTYHLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5126g00051 351 MobiDBLite consensus disorder prediction 295 319 - -
Pral5126g00051 351 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 MobiDBLite consensus disorder prediction 1 113 - -
Pral5126g00051 351 MobiDBLite consensus disorder prediction 1 22 - -
Pral5126g00051 351 MobiDBLite consensus disorder prediction 332 351 - -
Pral5126g00051 351 MobiDBLite consensus disorder prediction 293 351 - -
Pral5126g00051 351 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 MobiDBLite consensus disorder prediction 84 113 - -
Pral5126g00051 351 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Pral5126g00051 351 Gene3D - 173 235 - -
Pral5126g00051 351 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 MobiDBLite consensus disorder prediction 208 227 - -
Pral5126g00051 351 MobiDBLite consensus disorder prediction 208 281 - -
Pral5126g00051 351 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 285 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 MobiDBLite consensus disorder prediction 252 281 - -
Pral5126g00051 351 MobiDBLite consensus disorder prediction 38 73 - -
Pral5126g00051 351 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Pral5126g00051 351 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5126g00051 Pral-Chr5126 486750 491517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5126g00051 1 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.418 6.87e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral5126g00051 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5126g00051 K08064 - gmx:100808378 500.745