Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5126g00027 ATGTCTTACTCCAGAAGATCAAGGTATTCTCAATCACCTCTGTACAAGCGGTATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGGTCAAGATCTAGGAGCTTTTCAAGGAGCCCATCAAGAGATGCGGAGAATCCTGGCAACAATTTGTATGTGACAGGGTTGTCTCCTCGGATTACCAAGAGAGAGTTGGAGAAGCATTTTGCAAGCGAGGGAAAAGTGATAGACGTTCACCTGGTTGCTGATCCATGGACAAGAGAATCACGAGGGTTTGGATTTGTGACAATGGAAACTGTTGAGGAGGCTGACCGATGTGTTAAGTATCTGAATTCGTCTGTACTGGAAGGGCGTGTCATCACAGTAGAAAAGGCTAGAAGAGGTCGGGGTCGAACCCCAACACCTGGGAGGTATCTTGGGCTAAGGACTGTTCGAGTGCGTCGTCATCGATCTTCAAGCTATTCTCCTCGCCGCTCCTCAAGTTATTCTCCTTACGGAAGAAGCTATAGTCGATCACCATATTCTTCTGATCGCAGCAGGAGTCGTTCTTATTCTCCTTATCGCAGTCGACGGAGGTCTTGCTCCCCATATTATTATAGTCGGGATAGATCATATTCTCCTTATTATCGCCGAAGATCCTATTCTCCTTATTATCGTCACAGGTCATGCTCTCGATTCTGCTCACCATACAGCAGGTCACCTGTCAGAAGGCGCGATAGATCATACTCTCCTTATGACTCGCCTGACGATCGCTACTACAGAAGATACCGTTATAGGTCCATTTCCCCAAGTGCCTCCCCAAGGCCAAGGAGAAGCTCGAGGTGGTATTCTCGCAGTGTCTCTCCTGTGAAGAGGAGGAGCTTAAGGAGGAGCTATTCTCGGAGTCTGTCCCCTAGGCCAAGGAGGAGTTCACGAAGGAGGAGCTATTCTCCAAGTCTGTCCCCAAGACCAAGGAGGAGCTCACGAAGGAGCTATTCTCGCAGCATTTCTCCCAGACCAAGAGGCAGTAGAAGGGTTTCTTCTAAACGTTATAGAAGCTACTCAAGAAGTCCAAGTGTGAGTGCAAGTTCAAGATCGGTATCAAGGTCTTCTACTCCTGGATCAGCGTCTCCTTGA 1110 0.4838 MSYSRRSRYSQSPLYKRYGRSVSRSLSRSRSRSFSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVIDVHLVADPWTRESRGFGFVTMETVEEADRCVKYLNSSVLEGRVITVEKARRGRGRTPTPGRYLGLRTVRVRRHRSSSYSPRRSSSYSPYGRSYSRSPYSSDRSRSRSYSPYRSRRRSCSPYYYSRDRSYSPYYRRRSYSPYYRHRSCSRFCSPYSRSPVRRRDRSYSPYDSPDDRYYRRYRYRSISPSASPRPRRSSRWYSRSVSPVKRRSLRRSYSRSLSPRPRRSSRRRSYSPSLSPRPRRSSRRSYSRSISPRPRGSRRVSSKRYRSYSRSPSVSASSRSVSRSSTPGSASP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5126g00027 369 MobiDBLite consensus disorder prediction 281 304 - -
Pral5126g00027 369 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 33 258 - -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 343 369 - -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 260 369 - -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 263 278 - -
Pral5126g00027 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Pral5126g00027 369 FunFam Serine/arginine-rich splicing factor SR45a 2 131 - -
Pral5126g00027 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Pral5126g00027 369 SMART rrm1_1 48 121 IPR000504 GO:0003723
Pral5126g00027 369 MobiDBLite consensus disorder prediction 153 180 - -
Pral5126g00027 369 CDD RRM_SF 49 121 - -
Pral5126g00027 369 Gene3D - 2 130 IPR012677 -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 230 248 - -
Pral5126g00027 369 SUPERFAMILY RNA-binding domain, RBD 35 152 IPR035979 GO:0003676
Pral5126g00027 369 MobiDBLite consensus disorder prediction 1 50 - -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 227 248 - -
Pral5126g00027 369 MobiDBLite consensus disorder prediction 124 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5126g00027 Pral-Chr5126 354658 369980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5126g00027 48 163 Eukaryotic Initiation Factors Gene Family AT2G36660 31.034 2.95e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5126g00027 - - gmx:100808038 223.402