Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5126g00005 ATGGCAAACTTTGTTGGTTTCTTGGGCAGGTTCGTCTCTCTTTTCATCGTCTTTGTCCACCTCGGCTGCTTCATCTTCTCCACCGCGGCCGGCAGTGGCGGTGAAGGGGGAGGACAAGGTGCCCGAAAGTCTTCGTCAAAGAAACGCAAGGTATCCCCTGTTTCGCACTCGCGGCAACCTTCGCCTTCCCATCCCAATTTCAAAACCCGTAAGGCCCTTTCTTCTTCTTGGGCTTTCGTCAAGCACCTTTTCTCCCACAAACCCTGCAAAACCAGTGACGTTGCTCAGGGATCGCCGCAATCCTCCGCCTCCACCGCTATTTCCGCTGCTTCCGCCGTCTCCGCCGCACTGCCTTCTTTAACATCGACCAGATCCTCCCAGCAGTCGTTGGTCTCTCTGGCTCAAGCCGAGTCGCATCCGCTGGATCCTCCCGGGAAAAAACCATGTGCGTCGTGCCCAGAATCCGATATCGCCGCCGACAACAATCACTTCTTCCCCCTCCGCAATGACATTTTCCCCTGCACCGCCTGCGGCGAGGTTTTCCAGAAAGCACAAGTTCTCGAACAGCATCAATCGCTCAACCACGCCGTAGCGGAGCTGGTGGAGACCGACGCTGGTCACAACATAGTACAAATAATATTCAAGTCGGGTTGGACCAACCCACAGAAATGTCCCAGAATCAATCGGATCCTAAAGATCCATAACAGCCAGAAGATACTATCCAAGTTCGAAGAATACAGAGAGACGGTGAAGGCCAAGGCCGCCCGAAACGGGGCCGTAAAGAAGCGCGACGAGAGATGCATAGCCGACGGCAACGAGCTCATGAGATTCCATTGTTCCACATTCCTTTGCGACTTGGGACTCAACGGGAATTCCGGCATTTGTGGCCAGCAATACTGTAGTATCTGCGGGATCATCAAATCGGGGTTCTCCCCCAAGTTGGACGGAATCTCCACGCTGTCGACGAGCTGGAGGGCGCACGTGGCCATCCCGGAGGAGGTGGAGGAAGAGTTCAAGTTCATGAACATAAAGCGGGCCATGCTGGTATGCCGAGTCATAGCGGGCCGAATCGGCACTGACTCGGACGAGGCCGACAAGGAGGACGGGGGTTTTGATTCGGTGATGGCGCGAGGAGGAACCGGAGTTTACACCCGGCTGGACGAAGAGGAGCTTTTGGTGTTCAATCCCAGAGCCGTGCTTCCATGCTTTGTGATTGTGTACAGCGTGTGA 1230 0.5512 MANFVGFLGRFVSLFIVFVHLGCFIFSTAAGSGGEGGGQGARKSSSKKRKVSPVSHSRQPSPSHPNFKTRKALSSSWAFVKHLFSHKPCKTSDVAQGSPQSSASTAISAASAVSAALPSLTSTRSSQQSLVSLAQAESHPLDPPGKKPCASCPESDIAADNNHFFPLRNDIFPCTACGEVFQKAQVLEQHQSLNHAVAELVETDAGHNIVQIIFKSGWTNPQKCPRINRILKIHNSQKILSKFEEYRETVKAKAARNGAVKKRDERCIADGNELMRFHCSTFLCDLGLNGNSGICGQQYCSICGIIKSGFSPKLDGISTLSTSWRAHVAIPEEVEEEFKFMNIKRAMLVCRVIAGRIGTDSDEADKEDGGFDSVMARGGTGVYTRLDEEELLVFNPRAVLPCFVIVYSV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5126g00005 409 SUPERFAMILY ADP-ribosylation 198 408 - -
Pral5126g00005 409 MobiDBLite consensus disorder prediction 55 69 - -
Pral5126g00005 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 196 IPR013087 -
Pral5126g00005 409 MobiDBLite consensus disorder prediction 128 150 - -
Pral5126g00005 409 MobiDBLite consensus disorder prediction 32 69 - -
Pral5126g00005 409 Coils Coil 407 409 - -
Pral5126g00005 409 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 75 407 - -
Pral5126g00005 409 Gene3D - 196 408 - -
Pral5126g00005 409 ProSitePatterns Zinc finger C2H2 type domain signature. 174 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5126g00005 Pral-Chr5126 32630 34496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5126g00005 103 409 C2H2 Transcription Factor Family AT2G29660 56.782 3.67e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5126g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5126g00005 - - qsa:O6P43_014008 528.094