Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5126g00002 ATGGAAGGCCAGAGCCACATTATGATGCCTCTGACCGATAATCCTCCCGCCACTTCCATGTACCGGCGATCTTCTTCTCCTTCTTCATCAGGGCCTCCTCTGAGCGCCATAGACAGGTTCCTGTGGGGCCAACTCAGTCACCTTTCTGCTCTGTGGCCTAACAGTGACGACATAGAAGCAAGTTTAATGGATGGGTTTATAGCGAATAATGAAGCCCATCAGATGATGATACCTACAGTACTGAAGAAACAAGTGCAAGTTCTGGGGAAGAATAAAGCTACTGGTAATACAACGGTGGCAGGGAAGAGAATCAATAAGAAAGGGTCTTCTTCTGCGTCGTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGGTGAAGCTGGTGAATGAATACGGGGTGAGGAAATGGGCTCAGATAGCTGAGAATTTGGAGGGAAGAGCTGGGAAGCAATGCAGAGAGAGATGGCATAATCATTTACGTCCTGATATTAAGAAGGATAGTTGGAGTGAGGAAGAAGAGAAAATATTGGTAGAAACACATGCAAAGGTAGGGAATAGGTGGGCAGAGATAGCGAAGAGAATTCCAGGAAGGACAGAGAACGCAATCAAGAACCATTGGAATGCCACCAAAAGGAGACAGAACTCCAAGAGAAACCACAAATCTGCAAACAAAACCTCCAACAACAATGGAAGAAAGCCTCCTTCTTCCATTCTTCAAGATTACATCAAAAGCAAGACCCTCTCCAATAATAATAACCCCACCATTATTGCCAATGAGGACCACCTTCAGGGCCCACCTGATGAAAACCAATTCAAGCTTGTGATTTCTGATCATCAAGATCCCTCTCGTGAACCTGTGATGGCTGAAGCATTTGATGATGAACTTCTCTTCATGCAACAGTTCTTCCAGGACAATTATCAGAATCAGCAGGTTCAGTCCACTTTGGATTTTTATCTAACAGATGCTGGGCATGAGGGGTATCTTCCCGAGCAGAGTGTTGCTGCTACCATTGGTGCTCCCGTGAAACAATACCATCATCATTCTGATCTGTTTCTGGCTCAGTTATTGAATGGGGTTGGTTATAATTCACCCATTTTCTGCTGTGATTATGGAAAAGATCAAAATTTCAACATGGGTTTGCAGGTAGGGGATGATCAGCAATCTTGGTATGAAGCAAAGAGAGAGATGGATTTGATGGAACTGGTTTCCTCTCAGCTTTCAACTAGTAGCAGCAATAGAAGCTTCTAG 1257 0.4439 MEGQSHIMMPLTDNPPATSMYRRSSSPSSSGPPLSAIDRFLWGQLSHLSALWPNSDDIEASLMDGFIANNEAHQMMIPTVLKKQVQVLGKNKATGNTTVAGKRINKKGSSSASLIKGQWTDEEDRKLVKLVNEYGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEEKILVETHAKVGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSKRNHKSANKTSNNNGRKPPSSILQDYIKSKTLSNNNNPTIIANEDHLQGPPDENQFKLVISDHQDPSREPVMAEAFDDELLFMQQFFQDNYQNQQVQSTLDFYLTDAGHEGYLPEQSVAATIGAPVKQYHHHSDLFLAQLLNGVGYNSPIFCCDYGKDQNFNMGLQVGDDQQSWYEAKREMDLMELVSSQLSTSSSNRSF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5126g00002 418 SMART sant 167 215 IPR001005 -
Pral5126g00002 418 SMART sant 115 164 IPR001005 -
Pral5126g00002 418 MobiDBLite consensus disorder prediction 252 272 - -
Pral5126g00002 418 CDD SANT 170 213 IPR001005 -
Pral5126g00002 418 MobiDBLite consensus disorder prediction 223 240 - -
Pral5126g00002 418 PANTHER MYB PROTEIN-RELATED 103 238 - -
Pral5126g00002 418 MobiDBLite consensus disorder prediction 1 32 - -
Pral5126g00002 418 ProSiteProfiles Myb-like domain profile. 163 213 IPR001005 -
Pral5126g00002 418 Pfam Myb-like DNA-binding domain 119 177 - -
Pral5126g00002 418 CDD SANT 119 162 IPR001005 -
Pral5126g00002 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 166 IPR017930 -
Pral5126g00002 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 217 IPR017930 -
Pral5126g00002 418 ProSiteProfiles Myb-like domain profile. 111 162 IPR001005 -
Pral5126g00002 418 FunFam Transcriptional activator Myb isoform A 115 168 - -
Pral5126g00002 418 Gene3D - 169 239 - -
Pral5126g00002 418 SUPERFAMILY Homeodomain-like 113 209 IPR009057 -
Pral5126g00002 418 MobiDBLite consensus disorder prediction 17 32 - -
Pral5126g00002 418 MobiDBLite consensus disorder prediction 199 240 - -
Pral5126g00002 418 Gene3D - 115 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5126g00002 Pral-Chr5126 16364 18838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5126g00002 30 412 MYB Transcription Factor Family AT5G58850 39.671 6.28e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5126g00002 Myb_DNA-bind_6 2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5126g00002 K09422 - pvy:116129500 291.967