Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5124g00066 ATGGGGGATGATTCTAGTAATCTTGAAGACACAGTAATGAATAACAGCATTGAAGGGGAAGCTGAAGGAGAAGAGAGAGATCCAGAAAGCAATCCACTGAATCAGCCACTGCTCAAGAGGAATCGGACACTTTCCACCAATCCACTAGCTCTCGTCGGAGCCAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATTAATGAGAATGATCTGTTCAAGCATGATTGGAGGAGCAGATCGAAAGTTCAAGTTTTGCAGTATATATTCTGTAAATGGTCACTGGCTTTTCTTGTTGGACTTCTTACTGGACTTGTAGCAACCCTCATCAATCTTGCAATCGAGAACATAGCGGGTTACAAGATTCTCGCTGTTGTCGGATTCATCGAGAACGACAGGTATTTGGCGGGCTTCTTATATTTCACCGGCGTGAATTTCTTGCTAACATTCGGTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCCGGACCTGGTATACCTGAAATCAAAGCTTACCTTAATGGCGTCGATACTCCCGACATGTATGGTGCCGCGCCATTGATAGTCAAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGGCTAGATTTAGGAAAAGAAGGACCATTGGTACATATTGGGGCCTGCATAGCTTCCTTACTAGGCCAAGGAGGCACTGAAAAACACCGGATCAAATGGCGATGGCTTCGATATTTCAACAACGATCGAGACCGCCGAGATCTCATCACATGTGGAGCTTCCTCAGGGGTTTGTGCGGCATTCAGGGCACCTGTTGGAGGAGTTCTGTTCTCTCTAGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTTTTCAGCACAGCTGTGGTGGCAGTAGTGCTCAGGGCCTTCATTGAAATCTGCAATTCTGGGAAATGTGGCCTCTTTGGCACAGGAGGGTTGGTCATGTTTGATGTCAGCAGTGTAACAGTGAGATACCATGTAATGGACATCATCCCTGTTGTCCTCATTGGCATCATTGGTGGGGTATTGGGAAGCCTCTATAACCATCTTCTTCACAAGGTCCTCAGAGTCTACAGTATCATCAATCAGAAGGGGAAAATACAGAAGCTCCTACTCAGTCTCTCAGTTGCACTCTTCACATCAGTTTGCCAATATTGTCTTCCATTCCTAGCAAGATGCATCCCCTGCGATCCTTCGCTTCCAGAAAAGGCCTGCCCCACAAATGGGCGGTCTGGAAATTTTAAACAGTTCAATTGCCCCAGTGGTCACTACAATGAACTTGCTACTTTGTTGCTTACCACTAATGACGATGCTGTTAGAAACATATTCTCAACCAACACCCCACATGAGTATCATCCGTCTTCCCTCCTAATTTTCTTTGCACTATATTGCATATTAGGACTTATTACTTTCGGGATAGCTGTGCCATCTGGGCTCTTCCTTCCAATAATCCTCATGGGTTCTGGTTATGGCCGTCTTCTTGGCCTCTTGATGGGACCTCACACAAAAATAGACCAGGGGCTGTTTGCTGTTCTGGGTGCAGCCTCCCTGATGGCGGGTTCAATGAGAATGACAGTATCAGTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTGCTACTACCCATTACAATGATTGTTCTCCTGATAGCCAAGACTGTTGGAGACAGTTTTAACCCTAGCATCTATGATATTATACTGCACTTGAAAGGCCTTCCATTCTTGGACGCAAATCCTGAACCATGGATGAGAAATCTCACAGTGGGTGAGCTTGTCGATGTAAAAGCACCGGTGATTACCCTCAGTGGAATAGAGAAGGTGGCTCGTATAGTGGAAGTTCTTAAAAACACTACACATAATGGTTTCCCTGTAGTGGATGAACCAGCGGAAGCTTCAACAGGGGTGGCCAAGCTTCATGGACTGATACTAAGAGCACACCTTGTGCAAGCGCTAAAGAAGAAATGGTTCATGAAGGAAAGGAGGAGGACAGAGGAATGGGAAGTGAGAGAGAAATTTACGTGGGTGGACCTGGCAGACAGAGAAGGGAACATTGAGGAGGTGGCCGTGACGAGGGAAATGGACATGTTTGTTGATCTTCATCCTTTCACCAATAGAACTCCTTTTACAGTTCTGGAGAGCATATCCGTGGCAAAAGCGATGGTCCTCTTCAGACAACTAGCACTTCGACATATGCTTGTTTTGCCCGATTATCAAGCATCTGGGGTATCTCCTGTAATTGGGATCTTGACCAGGCGGGATCTACTAGCCCACAACATTCTTACAGTCTTTCCTCACCTGAAAAAATCGTGA 2331 0.4612 MGDDSSNLEDTVMNNSIEGEAEGEERDPESNPLNQPLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSKVQVLQYIFCKWSLAFLVGLLTGLVATLINLAIENIAGYKILAVVGFIENDRYLAGFLYFTGVNFLLTFGAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGAAPLIVKIIGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEICNSGKCGLFGTGGLVMFDVSSVTVRYHVMDIIPVVLIGIIGGVLGSLYNHLLHKVLRVYSIINQKGKIQKLLLSLSVALFTSVCQYCLPFLARCIPCDPSLPEKACPTNGRSGNFKQFNCPSGHYNELATLLLTTNDDAVRNIFSTNTPHEYHPSSLLIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGLLMGPHTKIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNLTVGELVDVKAPVITLSGIEKVARIVEVLKNTTHNGFPVVDEPAEASTGVAKLHGLILRAHLVQALKKKWFMKERRRTEEWEVREKFTWVDLADREGNIEEVAVTRXEMDMFVDLHPFTNRTPFTVLESISVAKAMVLFRQLALRHMLVLPDYQASGVSPVIGILTRRDLLAHNILTVFPHLKKS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5124g00066 777 SMART cbs_1 714 767 IPR000644 -
Pral5124g00066 777 SMART cbs_1 604 659 IPR000644 -
Pral5124g00066 777 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 ProSiteProfiles CBS domain profile. 711 777 IPR000644 -
Pral5124g00066 777 Pfam Voltage gated chloride channel 150 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5124g00066 777 Pfam CBS domain 713 763 IPR000644 -
Pral5124g00066 777 Pfam CBS domain 603 659 IPR000644 -
Pral5124g00066 777 CDD ClC_6_like 60 582 - -
Pral5124g00066 777 Gene3D - 592 751 IPR046342 -
Pral5124g00066 777 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5124g00066 777 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5124g00066 777 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5124g00066 777 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5124g00066 777 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5124g00066 777 MobiDBLite consensus disorder prediction 1 38 - -
Pral5124g00066 777 SUPERFAMILY CBS-domain pair 586 764 IPR046342 -
Pral5124g00066 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 768 - -
Pral5124g00066 777 FunFam Chloride channel ClC3 83 398 - -
Pral5124g00066 777 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Pral5124g00066 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 585 765 - -
Pral5124g00066 777 Gene3D Clc chloride channel 83 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5124g00066 Pral-Chr5124 363079 367093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5124g00066 15 777 Ion Channels AT3G27170 77.013 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5124g00066 K05016 - gmx:100788620 1276.92