LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5120g00013	ATGCGAGATAAAGAGGAACACCCGCGTCATTTGGGTATTGCGATTTCCAATAATCGGCTCCGTTCCGACGAAACAATGGATTCCGCTTCAGACTCAGATGGTTCTCATGTCTCTGCTACGCCCCCCAGGGAAGAGCCTTCACCATCCTTGCCGGTACTACCACCACCGCGGCGGCCAAAACCTGTTCTCGTTTCCAACAAATCGAAATCGTCTTCCTCGTCCAGCAAGAAATCTTCTAAATCCAAATTGGGCTCTTCAAAACCCACAAAACCGTCCAGTAAACAGGAATCCACTCAAGAAGAATTGCCCTGTAACTCCTTTTGCCTCCCTACTCTGCCCTTCCAAATTCGTCGACCTTCTGACTGCGTCACCCAATTGTCAACTGCGCAGTCATTTGAAACTCTCCCAGCTGGGTACTTCTCCAAATCCGCGTCTTTCTCCAAAATTCGAAGGCCCTTCCTCAGTTTTACAGATTCATCTGGAAATGGACCTTCCCTTGATTTTGCATCTCATCCAGGCCTCAAGAACGAGAGTAATGAGAGTTTTTGTCAGCAGGGTCATTCTATTCCAGTAGAGGTAGAGCGCGAACGTCTAAGGACAAGAAGTGTGACAAAATTAGGTAAGAGACATCCTAATCTGATAGGAGCTAATGTCCAGGCACCATCGGTGAAGGTGCGAAAATGTGGTGGTGAGGGAAATTTTGTGAGGTTGAACCTGAATAGCAAGAGGTGGAAGTTGCGGAACCATGGGAAAAAGAAAAATTTTGCATATAGCAAGCGTAGAAGTTACCCGAGAAAAAAAGTTAAATCGAAGCATGAAGATCAGGATCAGATGCAGTCGGTCTTCGAGTCTGAGGAGGATGCATTTGTTGTGCAGACCGCACAAAAGAAGTCCAGGGATTCTCGTGGAACCAAAGAACTTGATTGCAAAGTGATTGAAGAGGTTGTTTCAGCAGTTCGAGATGACCCATCTGATGAGAATCTGGTGAAGTTGCTTCAGTTAGTTTATGGCTATGATTCTTTTCGGGATGGTCAGCTGGAAGCAATCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACTGGTGCAGGAAAATCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCCTGGTCGTCAGTCCACTGGTAGCCTTGATGATTGATCAACGAAGAAAATTGCCTCCTGTGATTAATGGAGGACTTCTATGCAGCAGTCAGACACCTGAGGAAGCCGCTGAAACACTGAAGCATCTTCAAGAAGGTGCGTTAAAGGTACTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAATTTCTACAGCTTCAACTGTATCCCTTGTTGTGGTTGATGAAGCCCATTGTGTATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTTTTCTCCACAACAAACTAAATGCAGGTTCTTTTCTGGCAATGACAGCGACTGCTACAACCTTAACTTTAAATTCCGTCATGTCTGCTTTAGATATTCCTTGCTCAAATCTTATTCAGAAGACACAGTTAATGGACAATTTGCAGCTATCAGTCTCTTTAGCAAGAAATAGAATGAAAGATTTATTGATGCTCGTCAAGTCTCCTCCATATGTGGAAGTTAAAAGCATCATCATATACTGCAAATTTCAGTCTGAAGCTGATATAATTAGCAAATACTTGAGTGACAACAGTATCTCTGCAAAGAGTTATCATAGTGGTATCCCTGCAAAGGAGCGTAGCCATGTACAGGATTTGTTTGGTTCCAACAAGATTAGAGTGGTTGTTGCAACAGTTGCATTTGGCATGGGATTAGACAAAAGGGACGTTGGAGCTGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTATGTTCAGGAGATTGGACGTGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCACCTATTTTTTGATGATGAGACATATCTCAAACTCCTTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTCTCTGCGAAGTATTTCCTGCACAGAGGATTTCCGATGGCCAAATATATTCCTTGATCAAAGAATCTGCTTCACGGAGGTTTGACGTGAAGGAAGAGGTGATGCTGACGCTCTTGACTCGCTTGGAGCTGGGTGATGTGCAGTACTTACGTTTACTTCCACAGATAAATACCACTTGCACTTTGAGTTTTCACGAGACTCCCCCTCCATTACTTGCCCAAAAGCACTCTGTTGTTGCTGCAATACTGGAAAGGTCTGAGAATAAGCAAGGGCTATATGTCTTTGACATGCCCTCTGTAGCAAATGACATGGGAGTTACAGTTGCTGAAATATCCAATCAATTGCACAATCTAAAGTTGCTTGGAGAAATAACCTTTGAGATGAAGGACTTGGCCTATTGCTATGTGATTGTGAAAGTACCAACAGATTTTTTTGCGTTGTCAGCAAATCTTACACAATGGTTACACGAGTTTGAAAGATCAAAGGTACGGAAACTGGATGCAATGTATGATGCGGCATATCACGCTGTAAATATTTGTGACAAGACGCTAGGCTGCAGTGGTTCCGATCACACATCATGCTTGCAAAGGAAGATATTAGATTACTTTGCTGGGGTCGATAATAATTCCTTCTCCAAGAAGTTCGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCCAAATTCACACCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCGGCTGCTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGGCATGCAGACTTTCAGGCGGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTTTGTTGGAAAAGACAGCTCTAGCCATTCAAGATAA	2949	0.4347	MRDKEEHPRHLGIAISNNRLRSDETMDSASDSDGSHVSATPPREEPSPSLPVLPPPRRPKPVLVSNKSKSSSSSSKKSSKSKLGSSKPTKPSSKQESTQEELPCNSFCLPTLPFQIRRPSDCVTQLSTAQSFETLPAGYFSKSASFSKIRRPFLSFTDSSGNGPSLDFASHPGLKNESNESFCQQGHSIPVEVERERLRTRSVTKLGKRHPNLIGANVQAPSVKVRKCGGEGNFVRLNLNSKRWKLRNHGKKKNFAYSKRRSYPRKKVKSKHEDQDQMQSVFESEEDAFVVQTAQKKSRDSRGTKELDCKVIEEVVSAVRDDPSDENLVKLLQLVYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQRRKLPPVINGGLLCSSQTPEEAAETLKHLQEGALKVLFVSPERLLNEEFLSVISTASTVSLVVVDEAHCVSEWSHNFRPSFMRLRASFLHNKLNAGSFLAMTATATTLTLNSVMSALDIPCSNLIQKTQLMDNLQLSVSLARNRMKDLLMLVKSPPYVEVKSIIIYCKFQSEADIISKYLSDNSISAKSYHSGIPAKERSHVQDLFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFFDDETYLKLLSLMYSDGVDEYAVNKFLCEVFPAQRISDGQIYSLIKESASRRFDVKEEVMLTLLTRLELGDVQYLRLLPQINTTCTLSFHETPPPLLAQKHSVVAAILERSENKQGLYVFDMPSVANDMGVTVAEISNQLHNLKLLGEITFEMKDLAYCYVIVKVPTDFFALSANLTQWLHEFERSKVRKLDAMYDAAYHAVNICDKTLGCSGSDHTSCLQRKILDYFAGVDNNSFSKKFDQSSPFLRADIKVFLQSNSQAKFTPRAIARIMHGIASPAYPSAAWSKTHFWGRYRHADFQAVMEAAKEELKNFVGKDSSSHSR	982

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5120g00013	982	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	456	465	IPR002464	-
	Pral5120g00013	982	SMART	ultradead3	337	533	IPR014001	-
	Pral5120g00013	982	MobiDBLite	consensus disorder prediction	64	102	-	-
	Pral5120g00013	982	FunFam	ATP-dependent DNA helicase Q4	309	519	-	-
	Pral5120g00013	982	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	540	690	IPR001650	-
	Pral5120g00013	982	FunFam	ATP-dependent DNA helicase Q-like 5	527	718	-	-
	Pral5120g00013	982	Pfam	Helicase conserved C-terminal domain	555	650	IPR001650	-
	Pral5120g00013	982	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	317	830	-	-
	Pral5120g00013	982	Pfam	DEAD/DEAH box helicase	343	502	IPR011545	GO:0003676\|GO:0005524
	Pral5120g00013	982	Gene3D	-	312	518	IPR027417	-
	Pral5120g00013	982	NCBIfam	RecQ family ATP-dependent DNA helicase	331	684	IPR004589	GO:0004386\|GO:0006310
	Pral5120g00013	982	MobiDBLite	consensus disorder prediction	1	102	-	-
	Pral5120g00013	982	MobiDBLite	consensus disorder prediction	44	61	-	-
	Pral5120g00013	982	SMART	helicmild6	570	651	IPR001650	-
	Pral5120g00013	982	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	349	519	IPR014001	-
	Pral5120g00013	982	Gene3D	-	528	717	IPR027417	-
	Pral5120g00013	982	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	381	667	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5120g00013	Pral-Chr5120	197501	205111	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5120g00013	560	683	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.540	2.38e-15	77.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5120g00013	K10730		-	qsa:O6P43_023885	1151.73