Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5120g00011 ATGGCAATTGAAGAAGAAATTAAGGCAGAGTTCGGAAGAAGCGGTTTTGACCTTGAAGATGAAGAAGAAATTCTAAACAAATGTCTCCCATTTTGCATAAACTACAGTCTCAAGCCTTCGGATCTCGTTTCAAGTTGGGAGGTTTATTATCTAAACAGACAGCTGAGTGGATCAACAGTTCAAAGTGCTGAAATAGATGGCTTTTTGGTGTACCTACAAAATGAGCAGAAAGAAGCTATTGTCAAGGAGGAAACTGATATTCATATTTACTCTAGTAGAGATGTAGAAATGATCTTAAATGATGATGATGATATTTCAAAAGATGATGCTCCTGGAACTCCGACAGATCATCAACAAGCTCTTCTATCACCTGCATATGATCCAACCTCTTTAACTAATGGGAGTGTTTTATCATCTGGAAAATCATCAAAACCTGCAACAACATTTTCTAAGCGCACAAATAGGCTTGAGGTGAAGTTCAGCATCAACAACATGCCTGATCTAGAGAATAGAAAACAAGAACCTGGTCATGAGAATGATGAGGATGACATAGTCAGAAAGGTTCATCCACGGCAAAGGTGTTCATTTTTGGTGCATGGATCAGGGCCCAGACCAGGTTGTAGATTCATGTATGATAGGACTGAAGATCGGTTTAATGCATTAGAAAACCGAATTAAGAAACATACAAGGGTGCATGTGGCGTCTGGGCACTATGAAGAACCAATGGACCCAACACTTGCTTCACAGAGAAGCATTTTCACGGTTGGCATGATTTCTTGTGATGGAGAAGGGCGTCTAAATGAGAAGTCTGTCATGCTGCAGAGCAGTGCTGAGAACTCTGGAGGGCAACGGGTTCGCCTAGAATTACAACAACTAAGCCAGTTTTCAGTTTTCCCAGGGCAGGTAGTTGGTATTGAAGGGCATAATCCTAGTGGTCACTGTTTAGTGGCATCCAAAATGGTAGATTCTATAGTTGCCTCTCTTGGTGATAGCGAGAATTTGAATCCAGCAAAGAGGCAAGCCTTCGATAAGGAAAATCATCTGACAGATCTGCCTTGCAAGCAGAGGGAGTTATCAATGGTTATTGCAGCTGGCCCTTTTACTACCACAGATAATCTGTCGTTTGAACCTCTTGCAGAACTACTGGCATATGCAAAGAAAAGACCACCACAATTAATTATATTGATGGGACCATTTATTGACACTGAACACCCAGACATTAAAAAGGGAACCACAGAAAGGAGCTATGATGAAATATTTCGTATTGAAATCCTCAGAAGGTTGGAAGATTATGTAGAGTGTATGGGTTCTGCAGTACGTATTCTTCTCGTACCTTCTGTACGAGACGCTAACCATGATTTTGTTTTCCCTCAGCCCGCATTTGACATCAATCTTCCTGATCTCAAGCCTCAGGTCAAGGTTGGTTGCTGCACCGTGGATATTCTCAAGCAGCTGAGTGGGGAGGAAATATCACGAGTTTCAGCAGATGCGAAACCCAGTGATCGCATGAGTAGACTTGTAAACCATATTCTTAAGCAACAAAGCTTTTATCCTCTTTATCCACCGGCAGAAAGTGTTCCCTTGGACCATTCTCTTGCTCCAGAAGCTCTTCAAGTCCCGTCAGTGCCGGACATTCTCATTTTACCTTCAGACATCAAGTACTTTATCAAGGTGCTTAGTGAAGGAAGTGAAGGGGACCACATGAAGTGCATTTCTGTCAATCCAGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTTGCCGAGCTTGACTTCTATGGGAATTCTGACACAAGCAATGCTTCAATTGTTGGCATATAA 1821 0.4223 MAIEEEIKAEFGRSGFDLEDEEEILNKCLPFCINYSLKPSDLVSSWEVYYLNRQLSGSTVQSAEIDGFLVYLQNEQKEAIVKEETDIHIYSSRDVEMILNDDDDISKDDAPGTPTDHQQALLSPAYDPTSLTNGSVLSSGKSSKPATTFSKRTNRLEVKFSINNMPDLENRKQEPGHENDEDDIVRKVHPRQRCSFLVHGSGPRPGCRFMYDRTEDRFNALENRIKKHTRVHVASGHYEEPMDPTLASQRSIFTVGMISCDGEGRLNEKSVMLQSSAENSGGQRVRLELQQLSQFSVFPGQVVGIEGHNPSGHCLVASKMVDSIVASLGDSENLNPAKRQAFDKENHLTDLPCKQRELSMVIAAGPFTTTDNLSFEPLAELLAYAKKRPPQLIILMGPFIDTEHPDIKKGTTERSYDEIFRIEILRRLEDYVECMGSAVRILLVPSVRDANHDFVFPQPAFDINLPDLKPQVKVGCCTVDILKQLSGEEISRVSADAKPSDRMSRLVNHILKQQSFYPLYPPAESVPLDHSLAPEALQVPSVPDILILPSDIKYFIKVLSEGSEGDHMKCISVNPGRLAKGEGGGTFAELDFYGNSDTSNASIVGI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5120g00011 606 FunFam DNA polymerase alpha subunit B 2 76 - -
Pral5120g00011 606 Pfam DNA polymerase alpha/epsilon subunit B 471 557 IPR007185 GO:0003677|GO:0006260
Pral5120g00011 606 Pfam DNA polymerase alpha/epsilon subunit B 361 465 IPR007185 GO:0003677|GO:0006260
Pral5120g00011 606 Gene3D - 2 76 IPR043034 -
Pral5120g00011 606 Gene3D - 341 603 - -
Pral5120g00011 606 MobiDBLite consensus disorder prediction 160 181 - -
Pral5120g00011 606 PIRSF DNA_pol_alpha_2 1 603 IPR016722 -
Pral5120g00011 606 FunFam DNA polymerase alpha subunit B 341 492 - -
Pral5120g00011 606 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 4 596 IPR016722 -
Pral5120g00011 606 MobiDBLite consensus disorder prediction 112 127 - -
Pral5120g00011 606 MobiDBLite consensus disorder prediction 102 127 - -
Pral5120g00011 606 Coils Coil 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5120g00011 Pral-Chr5120 178369 184025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5120g00011 1 606 Core DNA Replication Machinery Family AT1G67630 57.051 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5120g00011 K02321 - qsa:O6P43_030564 906.746