Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5120g00003 ATGAAGAGCATACGCCGAGAAAACAAAACGTGGCCTCTCGTTTTGATTCTCTGGTGGTTCTTCGCCACTGTGTTGGATTTAATCTTCGTTTCTGTGAAACTCTTCAAGAATTTCAAATCCTTGGATCTGTCTTTCTTTTTGTTAGAGGAAAACGTGGTGGATTTCGTTTCCTTTCCTCTTTTGTTACTTCTCTGGTTCAATGCTCTGCCTTCTGTATGGACGAGGAAACGCAGTGAATCTGAACAAGTGTTGCTTCAAAAGAAGGACGGCGGCGAAGAAGAAGAACAAGAAGATAAGGAAGCATTTATAAATGCTGGAATATGGAGCAAGCTCACGTTTCAATGGCTGAATCCTATTTTCAGGAGAGGTCAGATTCAGAAACTTGACCTTCCTCATATCCCTTCAGTTCCTCAATCTGAAACTGCAGAATATGCTTCTTCCATGCTCGAAGATTCACTCCGAAAACGAAAACTCGAAAACGGTTCACTGACGAAAGCTATTGCTCATTCTATCTGGAAATCCTTGACCTTGAACGCAGTTTTCGCAGGTGTCAACACCATGGCCTCTTACATGGGTCCCTTGTTGATCACAAACTTCGTGAATTTCTTATCGGGAAATTATAATGATTCAAGCATCCACTACGGACTAATTCTTGCGTTCATTTTCTTCCTGGCGAAGACTCTGGAATCGTTAACTCAAAGACAATGGTACTTTGGGGCTCAGCGAATAGGAATTCAAGTCCGTGCAGCTCTCACAGGTCTGATATACAACAAATCACTATCGATCAAGTGTGGTGGACCAACACATGGTAAAATCATAAACTTAATCAGTGTGGATGTTGAAAGGATTGGAGATTTCTGCTGGTTCATTCATGGAGTATGGTTGCTTCCAGTTCAGGTTGTGTTGGCCTTGGTTATCTTGTACAGGAATTTAGGATTCACACCCTCCGTCGCGGCATTTGCTGTCACTGTTTTGGTCATGGTGTGCAATACTCCCATGGCTAATATGCAGGAAAATCTTCACTCCAAGATTATGGAAGCTAAAGATTCGAGGATTAAAGCGACTTCAGAGATACTAAAGAACGTGAGAATTTTGAAATTGCATTCATGGGAGTCCACATTTCTGAAGAGGCTCCATCAGCTTAGGGAAATTGAGAAGAACTGGCTTAAGAAATATCTGTATACTTGCTCAGCAGTGACGTTTCTGTTTTGGACATCACCAACTCTTGTTTCTGTGGTCACTTTTGGTGTCTGTATAATGGTGAAAACAGAATTAACATCAGCCACAGTACTCTCAGCTCTAGCAACTTTTCGCATCTTACAAGAACCAATCTACAACTTACCTGAGCTTGTCTCCATGATAGCTCAAACGAAAGTGTCCCTTGATCGAATCCAAGAATTCATTAAAGAAGAGGATAAAATGCAATTCATGACTAAGCCTACATTGAAACCTTCTGATATTGCCATTGAAATTAAAACAGGCGAATACTCATGGGAAGCTGATGATCAATACTACAAGAAACCGACCATTCAAATTACAGAGAAGTTGAAAATAGAGAAAGGTCAAAAGGTAGCAATATGTGGGTCGGTGGGGTCTGGCAAATCAAGCCTCCTATGCTGTATGCTTGGTGAGATTCCGAGGATTTCAGGCCCAGGAATTGAAGTACATGGAAGTAGAAGTTATGTTCCCCAAAGTCCTTGGATTCAATCGGGGACTGTGAGAGAAAATATATTGTTTGGCAGGAAAATGAACAAGGGCTTGTACGAGAATGTCCTGGAATGCTGTGCATTGCACCAGGATATCAATCAATGGGAAGATGGAGATTTGACCATGGTAGGGGAGAGCGGCGTAAACTTAAGTGGAGGCCAAAAACAGAGAATTCAACTGGCAAGGGCTGTTTACAATGATTCTGATATTTATTTCCTGGATGACCCTTTCAGTGCCGTTGATGCTCATACTGGAACGCATTTGTTTAAGAAATGTCTCCTGAAACTCCTATCTGAGAAAACAGTTGTTTACGCTACCCATCAGCTGGAATTTTTGGGAGCTGCTGATCTTGTCTTGGTAATGAAAGATGGGAAAATAGCTGGGTCCGCAAAGTATGAAGACCTGATAGCATGCCACACTTGCGAGCTTGTTGACCAAATGGCTGCTCATAAGGAAACAATCAAACAAATTAGACCGTGCTGCGAGTATAAATCCTTATCCAAGAACTGTACACCATGCCAAATACAGCAAATAAAAGTAGCTGAAACAAACCTTGAAGAAAACAGGAAAGAGTTGGAGAGAACCAAAGAAGAGAAAGCAGAGACGGGTCGAGTTGATTGGAGTGTTTACTCAACCTTCGTCACGTTTGCTTATAAAGGCGCATTTGTTCCCATTATTCTCTTATGCCAAATTCTCTTTCAAGGAATGCAAATTGGAAGCAATTATTGGATTGCTTGGGCGGCAGAACAAAGAGGCAGTGTTAGTAAAGAAATGCTTATAGGGACCTTTGTTTTGCTATCTGGTGGCAGTTCCATCTTCATACTAGGAAGGGCTATTTTCATGGCAAAAATTGCTGTAGAGACAGCTCAACGTCTTTACCAACAAATGATTACATCGGTTTTCAGAGCTCCCGTTTCTTTTTTCGATACCACCCCGTCAAGCAGAATCTTGAATAGGTGTTCCACAGATCAAAGTACAGTGGACACAGATATACCGTACAGATTAGCAGGACTAGTATTTGCACTTATCCAGTTGTTGAGTATCATCGTCCTGATGTCCCAGGTTGCTTGGCAAGTCATTCTTTTCTTTCTTGTCGTGCTTGCGATCTCCATCTGGTATCAGGCTTATTACATTACTACTGCCAGAGAATTGGCCAGGATGGTAGGAATAAGGAAGGCTCCAATCTTGCATCACTTCTCAGAATCAATTGCTGGGGTGGCCACAATCCGTTGTTTCAATCAACAGAAAAGATTTTATGGGAAAGTTATGGCTCTAATTGATGATTATTCTCGTGTGGCATTTCATAATTATGCCACCATGGAATGGTTATCTATTAGGATAAACTTTCTCTTTAATCTGGTCTTCTTCTTCGTTCTCATCATCTTGGTTACACTGCCAAGGTCTGCCATTGATCCCAGCTTGGCAGGTCTGGTAGCTGCTTATGGTTTGAACTTGAGTGTTCTTCAGGCTTGGGTGATATGGAACCTCTGCAATGTGGAAAACAAAATGATATCAGTGGAGAGAATACTGCAATTCACTAAGATACCAAGTGAAGCTCCATTGATAATTCAAGATTGCAGACCCCAAATAGAGTGGCCTACGGAGGGAAAAATTGAACTTCACAATCTCCATATTCAGTATGATCCTGCAGCTCCTATGGTTCTCAAAGGTGTCACTTGCACATTTCCAGGACACAAGAAGATTGGAGTTGTAGGGAGGACAGGAAGTGGAAAATCCACCTTAGTGCAAGCTCTCTTCCGTGTGGTGGAGCCTTCAGTAGGGTGGATACTTATTGATAGTTTGGATATTTGCAAGATTGGGCTAAAGGATTTGAGATCCAGGCTTGGCATAATTCCTCAGGATCCTACCTTGTTTCAAGGTACTGTAAGGAACAACTTGGATCCTCTAGAGCAACACTCAGATCAAGAACTTTGGGAGGTTCTCCGTAAGTGCCATCTTGCTGATATAGTTAGGAAGGACCCAAGGCTTCTTGACGCATCAGTGGCCGAGAATGGAGAGAATTGGAGTGTTGGACAAAGGCAACTTGTTTGTCTTGCCAGGCTGCTATTGAAGAAAAGAAGAATTTTGGTTCTTGATGAAGCTACTGCATCGATTGACACGACGACTGATAATTTAATTCAAAAGACTATCAGAGAAGAGACAAGTGAATGCACGGTCATTACAGTAGCACACAGGATTCCTACAGTTATTGATAATGACCTTGTATTGGTTCTCGATGAAGGGAGGATTGCAGAGTTTGATCACCCAGCTAAGCTACTAGAGAACAATTCATCATCATTCTCAAAGCTAGTATCAGAATTTTTGAGGAGATCAACTCAGAGTGATTGCCAAAATGACACAATGTGA 4074 0.4188 MKSIRRENKTWPLVLILWWFFATVLDLIFVSVKLFKNFKSLDLSFFLLEENVVDFVSFPLLLLLWFNALPSVWTRKRSESEQVLLQKKDGGEEEEQEDKEAFINAGIWSKLTFQWLNPIFRRGQIQKLDLPHIPSVPQSETAEYASSMLEDSLRKRKLENGSLTKAIAHSIWKSLTLNAVFAGVNTMASYMGPLLITNFVNFLSGNYNDSSIHYGLILAFIFFLAKTLESLTQRQWYFGAQRIGIQVRAALTGLIYNKSLSIKCGGPTHGKIINLISVDVERIGDFCWFIHGVWLLPVQVVLALVILYRNLGFTPSVAAFAVTVLVMVCNTPMANMQENLHSKIMEAKDSRIKATSEILKNVRILKLHSWESTFLKRLHQLREIEKNWLKKYLYTCSAVTFLFWTSPTLVSVVTFGVCIMVKTELTSATVLSALATFRILQEPIYNLPELVSMIAQTKVSLDRIQEFIKEEDKMQFMTKPTLKPSDIAIEIKTGEYSWEADDQYYKKPTIQITEKLKIEKGQKVAICGSVGSGKSSLLCCMLGEIPRISGPGIEVHGSRSYVPQSPWIQSGTVRENILFGRKMNKGLYENVLECCALHQDINQWEDGDLTMVGESGVNLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLLKLLSEKTVVYATHQLEFLGAADLVLVMKDGKIAGSAKYEDLIACHTCELVDQMAAHKETIKQIRPCCEYKSLSKNCTPCQIQQIKVAETNLEENRKELERTKEEKAETGRVDWSVYSTFVTFAYKGAFVPIILLCQILFQGMQIGSNYWIAWAAEQRGSVSKEMLIGTFVLLSGGSSIFILGRAIFMAKIAVETAQRLYQQMITSVFRAPVSFFDTTPSSRILNRCSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQVILFFLVVLAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGVATIRCFNQQKRFYGKVMALIDDYSRVAFHNYATMEWLSIRINFLFNLVFFFVLIILVTLPRSAIDPSLAGLVAAYGLNLSVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLIIQDCRPQIEWPTEGKIELHNLHIQYDPAAPMVLKGVTCTFPGHKKIGVVGRTGSGKSTLVQALFRVVEPSVGWILIDSLDICKIGLKDLRSRLGIIPQDPTLFQGTVRNNLDPLEQHSDQELWEVLRKCHLADIVRKDPRLLDASVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTTTDNLIQKTIREETSECTVITVAHRIPTVIDNDLVLVLDEGRIAEFDHPAKLLENNSSSFSKLVSEFLRRSTQSDCQNDTM 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5120g00003 1357 CDD ABCC_MRP_domain2 1105 1325 - -
Pral5120g00003 1357 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1107 1341 IPR003439 GO:0005524
Pral5120g00003 1357 FunFam ABC transporter C family member 10 159 472 - -
Pral5120g00003 1357 Gene3D ABC transporter type 1, transmembrane domain 754 1088 IPR036640 GO:0005524|GO:0016020
Pral5120g00003 1357 Pfam ABC transporter 515 646 IPR003439 GO:0005524
Pral5120g00003 1357 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 104 1346 - -
Pral5120g00003 1357 CDD ABC_6TM_ABCC_D1 177 464 IPR044746 GO:0140359
Pral5120g00003 1357 CDD ABC_6TM_ABCC_D2 792 1082 IPR044726 GO:0140359
Pral5120g00003 1357 Pfam ABC transporter transmembrane region 176 443 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5120g00003 1357 Pfam ABC transporter transmembrane region 809 1034 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5120g00003 1357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 707 IPR027417 -
Pral5120g00003 1357 SMART AAA_5 520 694 IPR003593 GO:0016887
Pral5120g00003 1357 SMART AAA_5 1133 1320 IPR003593 GO:0016887
Pral5120g00003 1357 Gene3D - 1090 1343 IPR027417 -
Pral5120g00003 1357 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 794 1070 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5120g00003 1357 FunFam ABC transporter C family member 3 1090 1342 - -
Pral5120g00003 1357 FunFam Multidrug resistance-associated protein 4 475 734 - -
Pral5120g00003 1357 Coils Coil 744 774 - -
Pral5120g00003 1357 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Pral5120g00003 1357 Gene3D ABC transporter type 1, transmembrane domain 163 466 IPR036640 GO:0005524|GO:0016020
Pral5120g00003 1357 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 179 456 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5120g00003 1357 SUPERFAMILY ABC transporter transmembrane region 794 1089 IPR036640 GO:0005524|GO:0016020
Pral5120g00003 1357 Pfam ABC transporter 1124 1272 IPR003439 GO:0005524
Pral5120g00003 1357 FunFam ABC transporter C family member 5 755 1088 - -
Pral5120g00003 1357 SUPERFAMILY ABC transporter transmembrane region 169 472 IPR036640 GO:0005524|GO:0016020
Pral5120g00003 1357 CDD ABCC_MRP_domain1 489 694 - -
Pral5120g00003 1357 Gene3D - 467 730 IPR027417 -
Pral5120g00003 1357 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 717 IPR003439 GO:0005524
Pral5120g00003 1357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1098 1333 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5120g00003 Pral-Chr5120 45158 50904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5120g00003 479 744 Calmodulin-binding Proteins AT2G36910 27.491 2.21e-20 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5120g00003 - - gmx:100809063 2029.6