Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5113g00005 ATGGGGAAAGCAAAGATTGAGATTAAGAGGATAGAGGATTCAGCAAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGGTTGCTTAAGAAAGCAAGAGAGCTCGCGATCCTCTGCGACGCACAGGTTGGGGTGCTTGTGTTCTCTAGCACTGGCAGACTCTACGAATATGGAAGCTCCAGCGTGGAGTCAATTATTGACCGCTATAATAAACAGAAAGATCATGAACACAATCCGCTTGTGAATCGAGCTTCAGAAGCCAAGTTTTGGCAGAGAGAAGCAACGATCTTGAGGCAAGAACTTCAACAGTTGCAGGAATTGCACAGGCGAGTCACGGGAGAAGAACTTTACGGTTTGGGAATTAACGAATTGAAAACTTTGGAAAATCAACTAGAGATGAGGTTAAAAAATGTCCAGATCAAGAAGGAGCAAATTTTAACCGATGAGATTAAAGAGTTACAACACAATGGACATGAAATTCGCCACCAAAATGTTCAACTCCACAAAACAATAGAAGCCATTAGTAAAGAAAATGCAGAATTACAGACAAAGGTTTCTGAAGCAAGGGTTGTGAATGAGGAATATGGGAATCCTAATCCCACATGCACTATCCATCTTCAGCTAAGCCAGCCACAATCTGAATCTGATGAATCACCAGCCAAAGCAATGGAGCTGGGATTAAGGCTGCTTTAG 693 0.4257 MGKAKIEIKRIEDSANRQVTFSKRRSGLLKKARELAILCDAQVGVLVFSSTGRLYEYGSSSVESIIDRYNKQKDHEHNPLVNRASEAKFWQREATILRQELQQLQELHRRVTGEELYGLGINELKTLENQLEMRLKNVQIKKEQILTDEIKELQHNGHEIRHQNVQLHKTIEAISKENAELQTKVSEARVVNEEYGNPNPTCTIHLQLSQPQSESDESPAKAMELGLRLL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5113g00005 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5113g00005 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5113g00005 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5113g00005 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5113g00005 230 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pral5113g00005 230 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral5113g00005 230 Coils Coil 121 144 - -
Pral5113g00005 230 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Pral5113g00005 230 Coils Coil 87 114 - -
Pral5113g00005 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5113g00005 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5113g00005 230 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5113g00005 230 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral5113g00005 230 Coils Coil 164 191 - -
Pral5113g00005 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 187 - -
Pral5113g00005 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5113g00005 Pral-Chr5113 118648 124750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5113g00005 1 224 MADS-box Gene Family AT4G37940 49.107 6.87e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5113g00005 K-box 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5113g00005 K09264 - gmx:100808145 263.462