Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5113g00002 ATGGGGAGAGGGAAGATTGCGATTAAGAGGATTGACAATTCAACAAACAGGCAAGTCACTTTCTCGAAGAGAAGAAGTGGTTTGCTCAAGAAAGCCAAGGAGCTTGCCATCCTCTGTGACGCTCAAGTTGGGGTCACCGTCTTCTCTAGCACCGGATTTAATTTCGTTTTCGGCTCCTCAAACATGAAGTCAATTATTGACCGCTACAATAAACAAAAAGATCAGGAACACCATCTGCTTATGAATCCAGCTTTCAGGAGCATTGTGAGGAGGAACCAAGGAGAAGCTTTGTCCCTTGAAGTAACCCAGTGGACAAGTGTTAAAAAGTTTTGGCAGAGAGAAGCAACGGTCTTGAGACAACAGCTGCAACACTTGCAGGAATTGCACAGGCAATTCATGGGTGAACAACTTTCTGGTTTGGAAATTGACGAATTGAAAAGTTTGGAAAATCAACTGGAGATGAGTTTGAAAAACGTTCAGACCAAGAAGGATCAAATTTTGACAGATGAGATTAAAGAGTTACAACACAAGGCCACTAGCCCTGGCTCGGAAAAAGCTCCCATTTTCGGAAACCTCATTCAATCCGAAAAACCAGTGCTCTATAATTTTATCCAAATGGCACAAACTCTTCCAATTCATGGCCAACCAGCGAAAGGAATCCTCCCTGCTTGTCCAATCGATGGGTAG 687 0.4338 MGRGKIAIKRIDNSTNRQVTFSKRRSGLLKKAKELAILCDAQVGVTVFSSTGFNFVFGSSNMKSIIDRYNKQKDQEHHLLMNPAFRSIVRRNQGEALSLEVTQWTSVKKFWQREATVLRQQLQHLQELHRQFMGEQLSGLEIDELKSLENQLEMSLKNVQTKKDQILTDEIKELQHKATSPGSEKAPIFGNLIQSEKPVLYNFIQMAQTLPIHGQPAKGILPACPIDG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5113g00002 228 Coils Coil 142 165 - -
Pral5113g00002 228 ProSiteProfiles K-box domain profile. 108 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5113g00002 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5113g00002 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5113g00002 228 Pfam K-box region 105 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5113g00002 228 Coils Coil 108 128 - -
Pral5113g00002 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5113g00002 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5113g00002 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5113g00002 228 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pral5113g00002 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pral5113g00002 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral5113g00002 228 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral5113g00002 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5113g00002 Pral-Chr5113 36152 60587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5113g00002 1 189 MADS-box Gene Family AT4G37940 53.439 4.13e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5113g00002 K-box 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5113g00002 K09264 - csav:115718840 214.157