Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5107g00002 ATGGCCATCGGAGCTTCTTTTTCGGCTGTGGCGACGGGGTTTGCCCCATTCTTTGTTGCTTCTATCAGAAATGCTTCTATCGGTGTGACAACATTCGAAGTCAGCTCATTGAAGAAGTTGAAAACATCTCCATATTTGACGTTCTACTGCTCGGCTTCATATCTACGTGGCGAACCAGGAGCAGAATCCGGTTCCGGCATCTCAGTCGACTGGGCCATGGACGGGCAGCGTTCCAGATCCGATGACCCATTCCTTCTCAATTACCAGCCTTCCGAGCTCCGAATCGCCTCCGAGTTCTTCGCAACATGGCTTCCCTTTCTCTCCAAAGATCTCTGCGGTCACTGTTCTGCAATTCTTTCTGATCGCATCCGTTCCATTGACTCCGAACCATGGTTTCACCGGTTGAAACCATGGTTTCAGCTGGACCACGGTTTGGGCTTCTGGACAGGGTATGAAAGCGAATTCATTGAAAGCATTGTTGAAGAAATGGGGTCAAAGTTACTTGATAAATCAGCATCTGGTCATGGCAAGTTAATTGGAATTGGACCAAAATTAGACAAACTGAAGTCAATCGTTGCAAGTGAATCAGAAGGAGTTGGGTTTATAGGAATATGGGGCACAGGAGGTGTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCAGGAGCGAGAGCGCAAAAACTTTGAGATTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGATTTGATTTCATTGCCAAGAAAACTCCTTTCTTCTCTAGATAAAAAGAGTATGGAAGTGGCTGACTTTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACTGACAGAAAAATTCTACTTGTCCTTGACGATGTGAGTGATATTAGGCAACTTGAAAATTTGGCTCCAAAGAAAGGATGGTTCAGCGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCATTTGTTATCATCGCACAGTGTATCTGCTGTGTATGAATTCAAATTATTGAGTTATAACGAGTCCCTTGAACTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTAGAACCGTCATTGAGTATGCTAGAGGCCTTCCTTTAGTGCTCACAGTGTTAGGTTCATCTCTTTGCAAAAGACCTATAGTGGAATGGAAGGATGAACTAGCTAAGCTCAAGAAAATTCCTCCAAAGGACATTTTGAAGATACTTCAGGTGAGTTTTGATGGACTGGATGATCAGCAGAAAACCATATTCCTGGATGTTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGATTTTCGCCCAGAAACTGAGATAAATGTTCTCATTAAGAAATCACTAATGATTAGTTATGAAGGGCATTTGTGGGTGCATCAAATTCTCCAAGATATGTGTAAATATATTGTCTATCAAGAATCACATTATGATGCTGGCAAGCGTTCCAGGATATTGTCTTTGGAGGATGCCAATCAAGGGACAGAAGCAATTCGAGGAATAGCGCTAACATTGGAAAAGTCATGTGATGCATTCTGGGATCCTGAATCCTTCTCAAAGATGAGTTGTTCAAAAGTTAGAAAACTTCCTGAGTTTGGAAAAGATATGGCATGTCTATCGAAGCTTGATTTAGAGAAGACTGCTCTAGCCAAACTACCTCAATCGTTGGGTAATTTGATTGGTCTCGTTGAATTAAATTTGACAAACTGCAAAAAGCTGGTTTGTCTTCCATGTAGTGTTAGCAAGTTGAAAGCTCTGAAAGTTATCAAAATTTCTGAATGCTCAAAGCTTTCATGGCTGCCAGAGAGTTTGAATGAAAATGAAGCTTTGGAACAGCTTCATTTGAGTGGGATTGCTATACAAGGGTTATCATTTAGTGACTACAATAGCGAAACACAATCTTCATCATCATGGAGTTGCTTATCCCTTCTTCAAAGGCCTTCAAGCTCCAAAAAGTTTTTGTTGCCGCCGTCTTTGTCGTTCTTGAAAGAATTAAACTTACGTTTTTGCAATCTCCAAGATGGATCACTTCCTGATGACATCAGCATGTTATCATCCTTGGAATTTTTAGATCTAACTGGAAACGATTTCATTGACTTACCATCTGGCCTCATTTCCAGTCTTTCGAAGCTTAAAGAAGTGGATGGCACCTATTCTCATTCAGATGACAAAGCAGCTTGTGGAGGTGTTCTTAAAGATGGCAACAATTGTATGAAGGAGGCTTTTCTTCTGAAATTAAGTGGCGGAGACACCCTCATAGCAAAACTATGGGGTTGCTTGATGGGTCTCAAAAGAGCTTGGGACACTGGTATTAGAGTTGTTGTCTTGAGAAGCGACTCCGCTGAAGCTGTTCGATTGATCAAATTTGAAGTCCCACAGACGCACAAGAATATTGGTCTGATCATGGAAATCAAAGGGATGTTAGAGCGGAAATGGTTTGCGGATATCCGGGTCTTTCACAGAGACGGCAATGGCATCGCTGATTTACTTTCCAAAAGAGCACTTAATGGAGCAATGGCCTGA 2577 0.4113 MAIGASFSAVATGFAPFFVASIRNASIGVTTFEVSSLKKLKTSPYLTFYCSASYLRGEPGAESGSGISVDWAMDGQRSRSDDPFLLNYQPSELRIASEFFATWLPFLSKDLCGHCSAILSDRIRSIDSEPWFHRLKPWFQLDHGLGFWTGYESEFIESIVEEMGSKLLDKSASGHGKLIGIGPKLDKLKSIVASESEGVGFIGIWGTGGVGKTTLARAFYEQERERKNFEIHCFLDNIREAWEKEDLISLPRKLLSSLDKKSMEVADFYEGMELIKSKLTDRKILLVLDDVSDIRQLENLAPKKGWFSEGSIIIITTRDKHLLSSHSVSAVYEFKLLSYNESLELFLEKAFKEEHPNEDYLKLARTVIEYARGLPLVLTVLGSSLCKRPIVEWKDELAKLKKIPPKDILKILQVSFDGLDDQQKTIFLDVACFFNGMDKDHVIQILETLDKDFRPETEINVLIKKSLMISYEGHLWVHQILQDMCKYIVYQESHYDAGKRSRILSLEDANQGTEAIRGIALTLEKSCDAFWDPESFSKMSCSKVRKLPEFGKDMACLSKLDLEKTALAKLPQSLGNLIGLVELNLTNCKKLVCLPCSVSKLKALKVIKISECSKLSWLPESLNENEALEQLHLSGIAIQGLSFSDYNSETQSSSSWSCLSLLQRPSSSKKFLLPPSLSFLKELNLRFCNLQDGSLPDDISMLSSLEFLDLTGNDFIDLPSGLISSLSKLKEVDGTYSHSDDKAACGGVLKDGNNCMKEAFLLKLSGGDTLIAKLWGCLMGLKRAWDTGIRVVVLRSDSAEAVRLIKFEVPQTHKNIGLIMEIKGMLERKWFADIRVFHRDGNGIADLLSKRALNGAMA 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5107g00002 858 Gene3D Ribonuclease Inhibitor 526 663 IPR032675 -
Pral5107g00002 858 SUPERFAMILY "Winged helix" DNA-binding domain 407 493 IPR036390 -
Pral5107g00002 858 Gene3D - 337 420 IPR042197 -
Pral5107g00002 858 CDD RNase_H_like 732 850 IPR044730 -
Pral5107g00002 858 Gene3D - 736 855 IPR036397 GO:0003676
Pral5107g00002 858 SUPERFAMILY Ribonuclease H-like 732 854 IPR012337 -
Pral5107g00002 858 PRINTS Disease resistance protein signature 599 615 - -
Pral5107g00002 858 PRINTS Disease resistance protein signature 278 292 - -
Pral5107g00002 858 PRINTS Disease resistance protein signature 201 216 - -
Pral5107g00002 858 PRINTS Disease resistance protein signature 371 385 - -
Pral5107g00002 858 Pfam NB-ARC domain 194 403 IPR002182 GO:0043531
Pral5107g00002 858 Pfam Reverse transcriptase-like 732 852 IPR002156 GO:0003676|GO:0004523
Pral5107g00002 858 Gene3D - 166 331 IPR027417 -
Pral5107g00002 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 429 IPR027417 -
Pral5107g00002 858 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 87 693 IPR044974 GO:0006952
Pral5107g00002 858 Gene3D Ribonuclease Inhibitor 666 735 IPR032675 -
Pral5107g00002 858 SUPERFAMILY RNI-like 542 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5107g00002 Pral-Chr5107 38418 46051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5107g00002 179 503 WRKY Transcription Factor Family AT5G45050 33.028 9.30e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5107g00002 - - pcin:129317404 454.136