Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00140 ATGGACAGCAGAATCGACCACGGGGAAACTCACAGGAACAAGTGTGCGGCATGCTTTAGGCAGTTCAACAAGTTGGAGCACTTAGTGGAGCACATGAGGATCTCATATCATTCGGTTCACGAACCCACCTGCGGCATTTGCGGGAAACACTGCAGATCATTTGAGTCTCTAAGGGAACACCTTATCGGTCCATTGCCAAAACAGGAATGCAGAGATATTTTTGCCAACCGAGGATGCAAGTTTTGCTTAAAGGTCCTTGACAGCCCCTACGCTCGAAGGATCCACCAAGAAAGATGCCAACTTTCTGCAAACACTGGACTAATTGGACGCTTTTCAAACCTGGGTATTCGTGATAATTTGACTATTGGAAGAGGGCCACAGGTAGTTGCACTTGCTTGCAAAATGGTCGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTCTGCATAATTGATGAACAAGAAAACATCATATTCCATTCTTACGTGAAGCCCCCAATTCCTGTCACAAACTACAGGTATGAGAAAACAGGTATTCGACCAGAATACCTGAGGGATGCAATGACGACGAGGCAAGTGCAGAGGAAGATTCAGGACTTCCTCTGCAACGGGGAACCCTTGTGGAAGGTCCGACCAAAATGTGGGAGAGCCAGGATTCTAGTAGGCCATGGGTTAGATCATGACCTGGAGTCTTTGCAAGTGGAATATCGAGCAGAAATGATCAGGGACACAGAAAAATACCCTCCATTGATGAAGACGAGCAAGCTGAGCAACTCACTCAAGTATTTGACACAAGCATATCTGGGGTATGACATTCAGACAGGGATACAGGATCCGTATGAGGATTGCGTGGCAACGATGAGGCTGTACATGAGGATGAGATCCCAACCACACAAAAAGGAGGAGCGCCCTTTGGCTTCAGATCCTCAAAATAAGAATAACTTTGCTTCGTGGAGGCAAAGAGAGCTGGAAAGAATGACCCCAGAACAAATGCTGGCAATCTCCAGGTCTGACTATTACTGCTGGTGCCTCGACTCCGTCTAG 1050 0.4752 MDSRIDHGETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICGKHCRSFESLREHLIGPLPKQECRDIFANRGCKFCLKVLDSPYARRIHQERCQLSANTGLIGRFSNLGIRDNLTIGRGPQVVALACKMVGGGSDGSLDLCARVCIIDEQENIIFHSYVKPPIPVTNYRYEKTGIRPEYLRDAMTTRQVQRKIQDFLCNGEPLWKVRPKCGRARILVGHGLDHDLESLQVEYRAEMIRDTEKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQPHKKEERPLASDPQNKNNFASWRQRELERMTPEQMLAISRSDYYCWCLDSV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00140 349 SMART exoiiiendus 127 301 IPR013520 -
Pral5106g00140 349 Pfam Exonuclease 146 288 IPR013520 -
Pral5106g00140 349 Gene3D - 125 316 IPR036397 GO:0003676
Pral5106g00140 349 CDD REX4_like 129 292 IPR037431 GO:0006364|GO:0008408
Pral5106g00140 349 FunFam RNA exonuclease 4 124 311 - -
Pral5106g00140 349 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Pral5106g00140 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Pral5106g00140 349 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 347 IPR047021 GO:0004527
Pral5106g00140 349 SUPERFAMILY Ribonuclease H-like 141 298 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00140 Pral-Chr5106 691172 693197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00140 1 349 C2H2 Transcription Factor Family AT5G40310 74.719 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00140 - - gmx:100813973 635.565