Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00127 ATGGAGTCCGGCCGTATTTTCTTCGGTTCCTCCACTTGCCGCGGGAACATGCTGTTTCTCGGGAACGGTGATCCAGTTTATAGAGGCGGATCGATAATAAGCATGGAGGAAAGCTCAAAGAAGCGACCATTTTTCAGCTCACCGGAGGAACTGTTCGACGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGACGCCTCACTCCCGAGCAGGTGCTTCTGCTGGAGAAAAGCTTTGAAGATGAGAACAAGCTGGAGCCGGAACGGAAGACCGAGCTGGCCAAGAAGCTGGGGTTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTATGATGCCCTGCTTTCAAAGTACAGCTCCATTGTCAAGGACAATGAAAATCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTGGCTAAAGAGATGCCACGAGAACCATTACCAGAAGAAAAGGCAGACCCACTTATGATGGAGCTAGCCCAAATGTCAACCCTGCCATTCAACGTGAAGGTGGAGGACCGACTCAGCAGTGGGAGTGGTGGAAGTGCAGTGGTGGACGAGGATGCTCCACAGCTTCTTGTGGACAGCGTCGATTCCTACTTTCCAGCTGAGAACTTTGATGGATGCGTGGCCAGCGTTGATAGGGTTCAGTCTGAGGAGGATGACGGCAGCGACAATGGTCGCAGTTACTTCTCTGATGTGTTTGTGGCCCCTGAACCTGAGCACCAAAACCATGAGGAGGGAGACCCGTTGTGTTGGTGGGTGTGGTCTTAA 843 0.5184 MESGRIFFGSSTCRGNMLFLGNGDPVYRGGSIISMEESSKKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKSFEDENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDALLSKYSSIVKDNENLKSEVVALNEKLLAKEMPREPLPEEKADPLMMELAQMSTLPFNVKVEDRLSSGSGGSAVVDEDAPQLLVDSVDSYFPAENFDGCVASVDRVQSEEDDGSDNGRSYFSDVFVAPEPEHQNHEEGDPLCWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00127 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Pral5106g00127 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Pral5106g00127 280 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Pral5106g00127 280 Coils Coil 139 159 - -
Pral5106g00127 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Pral5106g00127 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Pral5106g00127 280 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Pral5106g00127 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 202 IPR045224 GO:0003700
Pral5106g00127 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Pral5106g00127 280 Gene3D - 58 125 - -
Pral5106g00127 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Pral5106g00127 280 Pfam Homeobox associated leucine zipper 119 160 IPR003106 GO:0006355|GO:0043565
Pral5106g00127 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00127 Pral-Chr5106 620449 623210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00127 1 279 Homeobox Transcription Factor Family AT3G01470 60.208 1.42e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5106g00127 Homeodomain 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00127 K09338 - qsa:O6P43_008987 418.698