Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00126 ATGGAGTCCGGCCGTATTTTCTTCGGTTCCTCCACTTGCCGCGGGAACATGCTGTTTCTCGGGAACGGTGATCCAGTTTATAGAGCAGGCGGATCGATAATAAGCATGGAGGAAAGCTCAAAGAAGCGACCATTTTTCAGCTCACCGGAGGAACTGTTCGACGAGGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGACGCCTCACTCCCGAGCAGGTGCTTCTGCTGGAGAAAAGCTTTGAAGATGAGAACAAGCTGGAGCCGGAACGGAAGACCGAGCTGGCCAAGAAGCTGGGGTTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTATGATGCCCTGCTTTCAAAGTACAGCTCCATTGTCAAGGACAATGAAAATCTCAAATCAGAGGTGGTAGCCTTAAACGAGAAGCTTCTGGCTAAAGAGATGCCACGAGAACCATTACCAGAAGAAAAGGCAGACCCACTTATGATGGAGCTAGCCCAAATGTCAACCCTGCCATTCAACGTGAAGGTGGAGGACCGACTCAGCAGTGGGAGTGGTGGAAGTGCAGTGGTGGACGAGGATGCTCCACAGCTTCTTGTGGACAGCGTCGATTCCTACTTTCCAGCTGAGAACTTTGATGGATGCGTGGCCAGCGTTGATAGGGTTCAGTCTGAGGAGGATGACGGCAGCGACAATGGTCGCAGTTACTTCTCTGATGTGTTTGTGGCCCCTGAACCTGAGCACCAAAACCATGAGGAGGGAGACCCGTTGTGTTGGTGGGTGTGGTCTTAA 846 0.5189 MESGRIFFGSSTCRGNMLFLGNGDPVYRAGGSIISMEESSKKRPFFSSPEELFDEEYYDEQLPEKKRRLTPEQVLLLEKSFEDENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDALLSKYSSIVKDNENLKSEVVALNEKLLAKEMPREPLPEEKADPLMMELAQMSTLPFNVKVEDRLSSGSGGSAVVDEDAPQLLVDSVDSYFPAENFDGCVASVDRVQSEEDDGSDNGRSYFSDVFVAPEPEHQNHEEGDPLCWWVWS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00126 281 Gene3D - 59 126 - -
Pral5106g00126 281 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Pral5106g00126 281 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Pral5106g00126 281 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Pral5106g00126 281 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pral5106g00126 281 CDD homeodomain 65 121 IPR001356 GO:0003677
Pral5106g00126 281 Coils Coil 140 160 - -
Pral5106g00126 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 203 IPR045224 GO:0003700
Pral5106g00126 281 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Pral5106g00126 281 SMART HOX_1 63 124 IPR001356 GO:0003677
Pral5106g00126 281 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Pral5106g00126 281 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pral5106g00126 281 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00126 Pral-Chr5106 620449 623211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00126 1 280 Homeobox Transcription Factor Family AT3G01470 60.208 8.09e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5106g00126 Homeodomain 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00126 K09338 - qsa:O6P43_008987 420.239