Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00116 ATGTTTCACGGGTCTCCCTTTATGATCTGCGGGATGTCAGAAAGCATGTATCATAAGTGGTTTTTTAACCATACCCACTTGAAGATATCTTGGATTCATCATCAAATCCAGCAAAAAGATGTTTACTCGAGCTACCCACCTCCTGTTTTGCCTTCATCTTCGCCTCCATATCCTGGTGCTTTCCACAGAGAAACAGGGTCTTCTTCCTCGTCTGGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTAGCCGTGCTCTTTTTTATTTCTGGTCTTCTACACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCCTCGGCATCTGAGTCTAATAGACACCAGGAAATCTCAACCTCCGATGCTCTTCAAAGACAACTCCAACAGCTCTTCAATCTTCACGACTCTGGTCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGTCTGAAAGAACCATTTGACTGTGCTGTGTGCCTGTGTGAGTTTTCAGAGAAGGACAAGCTCAGATTGCTTCCATTGTGCAGTCACGCCTTTCACATCAATTGTATAGACACATGGCTTCTATCCAATTCCACATGTCCACTTTGTAGAGGAACCCTTTTAAATCCTGGGTTTTCAATTGAAAACCCCATGTACGATTTTGACGATCTAAGGGAAGAGGATGGGTGTAACGCTGAAAACGGGTTCACAAGTTTTAGACAAAAAACTGTTGAAATTGAAGAAACCGTAGAGAAAGGAGTGTTGCCTGTAAAACTTGGTAAGTTCAGAAGGCTGAATGTGGAGGCGGGGGAGGGTGGAGGAGGAGAGACGAGTAGCAGTAATTTAGATGCAAGAAGATGCTACTCAATGGGATCTTACCAGTATGTGTTAGGCAATTCAGACCTCCGAATTGCCTTGAACCATGACCGTCCAGGCCGCGAGGTAAGGCTTATAGAAGGACAAGAACAATCTGAGAAGCTTTCCATGGAGGAAGCAAAGAAGATTAGAAGTGTGAGTAAAGGTGAGAGCTATTCTGTTTCCAAGATCTGGCAGTGGTCCAAGAAGAGCAAGTTTTCTACTTCGTCCGAAGAAGATCAAATGGGGATGGGCATGCCATCTTCTCTTAATACGGACCTGCCATGGATGAGAAAAACAGAAGGAACATGA 1179 0.4368 MFHGSPFMICGMSESMYHKWFFNHTHLKISWIHHQIQQKDVYSSYPPPVLPSSSPPYPGAFHRETGSSSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASESNRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPLCSHAFHINCIDTWLLSNSTCPLCRGTLLNPGFSIENPMYDFDDLREEDGCNAENGFTSFRQKTVEIEETVEKGVLPVKLGKFRRLNVEAGEGGGGETSSSNLDARRCYSMGSYQYVLGNSDLRIALNHDRPGREVRLIEGQEQSEKLSMEEAKKIRSVSKGESYSVSKIWQWSKKSKFSTSSEEDQMGMGMPSSLNTDLPWMRKTEGT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00116 392 CDD RING-H2_EL5-like 165 208 - -
Pral5106g00116 392 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Pral5106g00116 392 MobiDBLite consensus disorder prediction 360 385 - -
Pral5106g00116 392 FunFam RING-H2 finger protein ATL46 128 213 - -
Pral5106g00116 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 213 IPR013083 -
Pral5106g00116 392 SMART ring_2 166 207 IPR001841 -
Pral5106g00116 392 MobiDBLite consensus disorder prediction 360 392 - -
Pral5106g00116 392 Pfam Ring finger domain 165 208 IPR001841 -
Pral5106g00116 392 SUPERFAMILY RING/U-box 145 213 - -
Pral5106g00116 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 70 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00116 Pral-Chr5106 579489 581401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00116 63 369 C3H Transcription Factor Family AT2G18650 40.456 2.45e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00116 - - qsa:O6P43_004596 533.487