Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00101 ATGGGCAAAAACATGGAGTTTCAGGACGCTGTGAGTTTCGTTGTCCACCGATCCATACAGAAAAATCGGGTTTCTCACAAAGCAACGGAAGCAGAGAAATTTAACGACACCGCCACTCCAGGCCGAAAATGGAAGATATTCTACCGGGCATCGTCGGCCGTCCCTTCAAAACAATCAAAACCTGGAAAGAAACAGCCCCCGGAAGAGTTTCTCTGTCCCATATCAGGGTCTCTCATGGCAGACCCCGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCTGTTCAAGCTTGTAAAAATTTAAACTTCACACCACGGCTCTCCGATGGCTCCACGCCCGATTTTTCTACCGTAATTCCCAACCTTGCCCTTAAATCTGCCATTGCTAAATGGTGCCAGAACTCCGCCAACCTACTCCCCGAGCCGCCTGATGTAGCTTCTTCTGAGAAGTTCGTGCATAGACTAATGACGAAGACCGAGAAGACAGATTCAAGTGTCCCGAACAAAATAGAGTCGCAGAAGGTTTTGATCACCGAGGAAGAGCTGATTCAAGGAATGAAGGAGAACCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTCACTCGACGGCCTGCTCAACCTTACTGGAACTCAGAGGAATCGGCGGGTTCCTCTCCGGCATCTCCGCCTATGCAACTTTCGACTCGACCAAGCTGCTATTCTTCTTCTTCATCCTCAGAAATCGAAGTCATTATTCCTAGCTCGCCTGAAGAAGAGAATATCTTTGCGAAGTTAAAAAGCTCACTAGTGTCCGAGATCGAAGAAGCCGTTATTTCACTAAGAAAGCTCACGAAAACTAGAGAGGATACAAGGGTCCATCTCTGCAGTCCTCGGTTACTCTCCGTCCTTCGATCGCTGATCGTGTCCAAGTACACTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAACCTCTCGTTGGAGAAAGTGAACAAAGTAAAGATACTGCGGTCCGGAATCGTTCCCCCGTTGATTGACGTATTGAAGGGGGGATCCCCTGAGGTGCAGGAACACGCTTCCGGCGCACTCTTCAGCTTGGCCATTCATGACGATAACAAGACTGCAATCGGAGTGCTGGGTGCTCTGCCGCCGCTGCTCAACTTGCTTCAATCCGATAATGAGCGAACTCGAAATGACTCGGCGCTTACACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGATAAAACTCGGGTCGGTTCCGATCCTAATGAACATGTTAAAGTCGGGCACAATGAGGGGTTACGTGCTACTCATACTAGGCCACTTGGCATCTTGTGGGGATGGCCGGGCGGCGATGTTGGATGCGCGGGCGGTGGAGTGCTTGGTGGGGCTACTAAGCGGTAGCGACTTGGGTTACGGATCGACCCGGGAGAGCTGCGTGGCCGCGTTGTATGAACTGAGTCACGGCGGTTTGAGGTTTAAAGCGGTGGCAAGGGCGGCGGGGGTGGTGGAGGCATTGAAGAAGGAGGAGAAGGTGGGAAGCGAGAGGGCGAGGGAGAAGGTGAAGCGGATATTGGAGATGATGAGGGTGAAGGAGGAATCCGATGAGGACGACGTCGACTGGGAGGGGCTTCTTGACTCGGGTTTGAGTAGTCTGAGTCGGGTTTGTGTCTCGAGCGAGTCTACTGTTAACGTGCCCGGGTTATGA 1704 0.5217 MGKNMEFQDAVSFVVHRSIQKNRVSHKATEAEKFNDTATPGRKWKIFYRASSAVPSKQSKPGKKQPPEEFLCPISGSLMADPVIVSSGHTFERVSVQACKNLNFTPRLSDGSTPDFSTVIPNLALKSAIAKWCQNSANLLPEPPDVASSEKFVHRLMTKTEKTDSSVPNKIESQKVLITEEELIQGMKENPPVNFNHAATEVTRRPAQPYWNSEESAGSSPASPPMQLSTRPSCYSSSSSSEIEVIIPSSPEEENIFAKLKSSLVSEIEEAVISLRKLTKTREDTRVHLCSPRLLSVLRSLIVSKYTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDVLKGGSPEVQEHASGALFSLAIHDDNKTAIGVLGALPPLLNLLQSDNERTRNDSALTLYHLSLVQSNRTKMIKLGSVPILMNMLKSGTMRGYVLLILGHLASCGDGRAAMLDARAVECLVGLLSGSDLGYGSTRESCVAALYELSHGGLRFKAVARAAGVVEALKKEEKVGSERAREKVKRILEMMRVKEESDEDDVDWEGLLDSGLSSLSRVCVSSESTVNVPGL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00101 567 MobiDBLite consensus disorder prediction 206 237 - -
Pral5106g00101 567 FunFam RING-type E3 ubiquitin transferase 47 138 - -
Pral5106g00101 567 Pfam U-box domain 67 135 IPR003613 GO:0004842|GO:0016567
Pral5106g00101 567 Gene3D - 252 529 IPR011989 -
Pral5106g00101 567 MobiDBLite consensus disorder prediction 204 237 - -
Pral5106g00101 567 FunFam RING-type E3 ubiquitin transferase 251 527 - -
Pral5106g00101 567 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Pral5106g00101 567 SMART arm_5 364 404 IPR000225 GO:0005515
Pral5106g00101 567 SMART arm_5 444 487 IPR000225 GO:0005515
Pral5106g00101 567 SMART arm_5 323 363 IPR000225 GO:0005515
Pral5106g00101 567 SMART arm_5 405 443 IPR000225 GO:0005515
Pral5106g00101 567 SMART arm_5 282 322 IPR000225 GO:0005515
Pral5106g00101 567 SUPERFAMILY RING/U-box 59 142 - -
Pral5106g00101 567 Pfam Kinesin-associated protein (KAP) 304 451 - -
Pral5106g00101 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 371 IPR000225 GO:0005515
Pral5106g00101 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Pral5106g00101 567 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Pral5106g00101 567 SUPERFAMILY ARM repeat 255 538 IPR016024 -
Pral5106g00101 567 PANTHER U BOX DOMAIN-CONTAINING 37 528 - -
Pral5106g00101 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00101 Pral-Chr5106 500355 502394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00101 61 563 U-box Gene Family AT5G40140 55.294 2.49e-180 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00101 - - qsa:O6P43_004571 651.744