Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00070 ATGAAGTTCTGCAAGACGTACCAGGAGTACATGCAAGGGCAGGAGAAGAAACTACCTGGGGTTGGCTTTAAGAAGCTCAAGAAGATCTTGAAGAAATGCAGAGTGGACTATCAACCCCAGAATCAGGATGCCCTCATTGACGAAGCCCACGCCCACGTCGTCGGAACGTGCCCCGATCATTGCCCCGTGTGCGATGGGACGTTCTTCCCTTCACTTCTCAATGAAATGTCAGAAGTAGTAGGCTGCTTTAATCAGCGAGCGCAGAAATTACTGGAGCTACACCTTGCTTCTGGCTTCAGAAAGTACTTGTTTTGGATCAAAGGAAAATTGCGAGGAAACCACACCGCTCTCATTCAAGAAGGCAGAGATCTGGTTACCTATGCACTGATCAATGCCGTTGCTATTCGAAAAATACTCAAAAAATATGACAAGGTTCATTATTCGAAGCAAGGCCAATTGTTCAAGTCTCAGGTCCAGAGTATGCATATGGAAATTCTTCAGAGTCCTTGGTTTTGTGAGCTGATGGCCTTGCACATCAATCTAAGGGAAACGAAGCCTCAGCCCAGGCACGCAGCTGTATTGTTTGATGGATGTTCTCTTACATTCAAGGATGGAAAACCATCAATCACTTGTGAGCTCTTTGATTCAATCAAACTTGATATCGATTTGACTTGTTCTATATGCTTGGACACGGTATTTGATCCGGTTTCTCTTGCCTGTGGCCACCTATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTCACTATTGTTGATGGACTCAAGGAAGCCAATCCTAAAGCAAAATGTCCTCTTTGCCGAGAGAGTGGTGTTTATGAAGGTGCTATCCACTTGGAAGAATTGAATATTCTGTTAGGGCGAAGGTGTCAAGAATACTGGGAAGAAAGACTTCAGGCGGAGAGGGCAGAGAGGCTTAAGCAGATAAAGGAGCATTGGGAATCAGAGTGCAGGGCTGTATTGGGCGTCTAA 990 0.4566 MKFCKTYQEYMQGQEKKLPGVGFKKLKKILKKCRVDYQPQNQDALIDEAHAHVVGTCPDHCPVCDGTFFPSLLNEMSEVVGCFNQRAQKLLELHLASGFRKYLFWIKGKLRGNHTALIQEGRDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQVQSMHMEILQSPWFCELMALHINLRETKPQPRHAAVLFDGCSLTFKDGKPSITCELFDSIKLDIDLTCSICLDTVFDPVSLACGHLFCYMCACSAASVTIVDGLKEANPKAKCPLCRESGVYEGAIHLEELNILLGRRCQEYWEERLQAERAERLKQIKEHWESECRAVLGV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00070 329 SMART ring_2 225 273 IPR001841 -
Pral5106g00070 329 CDD RING-HC_BAH1-like 215 288 - -
Pral5106g00070 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 327 IPR013083 -
Pral5106g00070 329 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Pral5106g00070 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 IPR033326 -
Pral5106g00070 329 ProSiteProfiles SPX domain profile. 1 156 IPR004331 -
Pral5106g00070 329 SUPERFAMILY RING/U-box 218 277 - -
Pral5106g00070 329 Pfam Zinc finger, C3HC4 type (RING finger) 222 275 - -
Pral5106g00070 329 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Pral5106g00070 329 CDD SPX_BAH1-like 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00070 Pral-Chr5106 386614 389596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00070 222 283 C3H Transcription Factor Family AT4G28270 41.791 2.27e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00070 K16275 - gmx:100787904 555.058