Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00039 ATGGCTGATCTCTCTGGCGCCGTAATCGGCTTCAAGCGTTACCGTGACTTGCAGACACTGCTGAGCGGGGCAATGACTAACCTGTACACGTGTCTTGATGGGTTTGCGTACAGCCGAGGGAATGTGAGGGACAGGATCCAGGACAAGTTGTTTGAGATCTCGCGTCAAGTTAGTAACTCATTGGCCATGCTCAAGAACGTGCCCGGACTGAAGAAAGCTTCCGAGTCTGAGATCTTCCCGGAGCACGGGAACGTGAAAAATGGGTTCCCTTCGTGGTTGTACTCCAGAGAACGAAAGCTCCTGGAAGCCAATGTGAATGAAACGAGGTTCGATCTCGTGGTGGCAAAAGATGGCACGGGAAATTTCACTTCAATTGGGGAGGCTGTGAATGCGGCTCCCAACTCCAGCACAAGCAGGATTGTGATACACATAAAAGCCGGGGCGTACTTTGAGAATGTGGAGGTGATCAGGAAAAAGAGCAATTTGATGTTCGTTGGGGATGGAATTGGGAAGACGGTAGTGAAAGCCAATAGGAATGTCGTCGACGGATGGACAACTTTTCAATCAGCCACCGTAGCTGTGGCGGGAACGGGATTCATAGCAAAGGGGGTAACGTTCGAGAACTTTGCGGGAGCGAGCAAACACCAAGCCGTGGCTCTGCGAAACAGTGCAGACCTATCGGCATTCTACAGATGCAGCTTTATTGGGTATCAAGACACCCTCTACGTCCATTCCCTCCGACAGTTCTACCGCGACTGCGACATTTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCTCTGTTCCAAAACTGCAACTTGTACGCGCGCAAGCCTCTGCAGAACCAGAAGAACATGTTCACCGCTCAGGGCAGAGACGACCCTAACCAGAGCACCGGCATTTCCATCCTGAACTGCAAGGTCGCCGCCGCTCAGGATTTGATCCCCGTCAAGTCCTCATTCAAGACCTACTTGGGACGCCCCTGGAAGCCCTATTCCAGGACGGTGTATCTGGAATCCTACATGGAGGATGTGATTCAGCCTGAGGGGTGGTTGGAGTGGAACGGAACGTTGGGCTTGGACACGTTGTATTATGGGGAGTACATGAACAGAGGTCCTGGTTCCAACACGAGCGCCAGAGTCAGATGGCCTGGTTTTAGGGTCATCAACTCCTCCGCCGAGGCTTCTCAGTTCACAGCCGCACGGTTTATTCAGGGATATGACTGCCCAATTGCTTTTATATGGTCATGGATCGTAGGCCCAGCTAGTTGCAGGCCTGATTTGTTTTTATCCAATCCGAAGTCGAAAGAAAGAGTTTTTTTTCCATTGTGA 1335 0.5191 MADLSGAVIGFKRYRDLQTLLSGAMTNLYTCLDGFAYSRGNVRDRIQDKLFEISRQVSNSLAMLKNVPGLKKASESEIFPEHGNVKNGFPSWLYSRERKLLEANVNETRFDLVVAKDGTGNFTSIGEAVNAAPNSSTSRIVIHIKAGAYFENVEVIRKKSNLMFVGDGIGKTVVKANRNVVDGWTTFQSATVAVAGTGFIAKGVTFENFAGASKHQAVALRNSADLSAFYRCSFIGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAALFQNCNLYARKPLQNQKNMFTAQGRDDPNQSTGISILNCKVAAAQDLIPVKSSFKTYLGRPWKPYSRTVYLESYMEDVIQPEGWLEWNGTLGLDTLYYGEYMNRGPGSNTSARVRWPGFRVINSSAEASQFTAARFIQGYDCPIAFIWSWIVGPASCRPDLFLSNPKSKERVFFPL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00039 444 Gene3D - 106 413 IPR012334 -
Pral5106g00039 444 Pfam Pectinesterase 111 407 IPR000070 GO:0030599|GO:0042545
Pral5106g00039 444 CDD PMEI-like_3 16 69 - -
Pral5106g00039 444 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 67 IPR035513 -
Pral5106g00039 444 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 67 IPR035513 -
Pral5106g00039 444 PANTHER PECTINESTERASE 13 419 - -
Pral5106g00039 444 Pfam Plant invertase/pectin methylesterase inhibitor 12 63 IPR006501 GO:0004857
Pral5106g00039 444 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Pral5106g00039 444 FunFam Pectinesterase 105 416 - -
Pral5106g00039 444 SUPERFAMILY Pectin lyase-like 110 407 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00039 Pral-Chr5106 236281 240092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00039 3 407 Carbohydrate Esterase AT4G02320 55.319 3.08e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00039 K01051 - gmx:100802881 668.692