Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00024 ATGGCCACCAGAAATCGAACTGTACTATTTAGAAAGCACAGAGATGCCGTCAAGAGTGTTCGAGCTCCTTTATCTTCCTCAGCTTCTGGTTCCGGTGGTCCCGTTATTGAAATGGTTAGCACTTCACTTCTTCGTTCGAATCAATCTTCATATGCTCCTCTAAGCACCGAAGATCCGGGCCCTTCGAGAGATGCATTTACTGTGGGGTTGCCACCGGCTTGGGTAGATGATTCTGAAGAAATAGCTGCAAATATACAACGTGCTCGGGCTAAAATGTCTGAGCTTGTCAAACTTCATGCAAAGGCATTAATGCCCTCTTTTGGTGATGGTAAAGAAGATCAACAACAGATTGAGATTCTCACCCAGGAGATTACAACTATCTTGAGAAAATCTGAGATGAAGCTAAAAAGACTTTCTGCCACAGGCGGGTCCTCTGAGGATTCAAACGTTAGAAAAAATGTGCAGCGTTCCCTTGCTACAGACCTTCAGAACCTGTCAATGGACCTCCGGAGAAAGCAGTCACAATACTTGAAACGGTTGCAGCAGCAAAAGGAGGGATATGATGGGGTTGACTTGGAGATGAATGTGAATGGGTATAAATTTGGTTCGCAGGATGATGGATTCAGTGATGTGGGTCTCAGTGATCATCAGATGGCGAAGCTAAAGAAGAGTGAGCAATTCTCGGAGGAAAGGGAAAGAGAGATTGAACAGGTCACTAAATCAGTGAATGAGCTGGCACAGATCATGAAGGATCTCTCTGTTCTTGTGATAGACCAGGGGACGATTGTTGATAGAATTGATTACAACATTCAGAATGTTGCTACATCTGTTGAAGAGGGCTTTAAGCAGTTGGAGAAGGCTGAGAGAACACAGAAGAAAGGAGGAATGGTTACGTGTGCAACAGTGCTTGTTATAATGTGCTTCGTCATGCTAGTCCTCTTGATACTCAAGATGATATTGTTTTAG 966 0.44 MATRNRTVLFRKHRDAVKSVRAPLSSSASGSGGPVIEMVSTSLLRSNQSSYAPLSTEDPGPSRDAFTVGLPPAWVDDSEEIAANIQRARAKMSELVKLHAKALMPSFGDGKEDQQQIEILTQEITTILRKSEMKLKRLSATGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSQYLKRLQQQKEGYDGVDLEMNVNGYKFGSQDDGFSDVGLSDHQMAKLKKSEQFSEEREREIEQVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFKQLEKAERTQKKGGMVTCATVLVIMCFVMLVLLILKMILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00024 321 FunFam Syntaxin-43 71 279 - -
Pral5106g00024 321 PANTHER SYNTAXIN 77 307 IPR045242 -
Pral5106g00024 321 SMART SynN_4 65 181 IPR006011 GO:0016020
Pral5106g00024 321 CDD SNARE_syntaxin16 229 286 - -
Pral5106g00024 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
Pral5106g00024 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Pral5106g00024 321 SMART tSNARE_6 220 287 IPR000727 -
Pral5106g00024 321 Gene3D - 71 279 - -
Pral5106g00024 321 Pfam SNARE domain 261 313 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00024 Pral-Chr5106 145957 150788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00024 1 321 SNARE and Associated Proteins AT5G26980 71.254 3.80e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00024 K08489 - gmx:100803629 451.825