Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00006 ATGGAAGAAGTAGTATTATTGGTTGATGATTTGAAATTACTTTCCGGGATTCCTCGCTGCAGAATATGTCACGAAGAAGAATTTGAGAGCCCCGAAAGTCTTGAAGCTCCCTGTGCTTGTTCTGGGACCATTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACTTGTGAAATATGTCTTCAGCAATATGAAGCTGGCTATACGGCAGCCCCAAAGCAATCTCAGATAGATGACGCGGCTATGACAATCAGAGATAGCCTGCAAATTCCAAGGGATGACGAACCGTTAAGCTCAAGATTAGAGGGTAGTGACGAAGGAGCCACAACAGAAGGAGATTACTCCGAGTGCACGTCTGCGGCTGATAGAACCGCATCTTGCTGCCGATCACTGGCTTTATTTTTCACCCTCGTTTTGCTATTGAGACATCTTTTCGTAGTGCTCACAAATACAAAGGAAGATTACCCATTTTCACTTTTTACGGTCTTTCTACTAAAAGCAAGCGGGATCATTCTACCCATGTACATAATCATGTGGGCTATTGGAGGCATGTATGGCAGTATTCAACGTCACTACCAGGATTTTGACAACGACACATCAATATCCGACAGTGAAGATGAAGAGAGTGAACTGATGCACGATGCCATTGTTGCACATCAATAA 684 0.4357 MEEVVLLVDDLKLLSGIPRCRICHEEEFESPESLEAPCACSGTIKFAHRDCIQRWCNEKGNTTCEICLQQYEAGYTAAPKQSQIDDAAMTIRDSLQIPRDDEPLSSRLEGSDEGATTEGDYSECTSAADRTASCCRSLALFFTLVLLLRHLFVVLTNTKEDYPFSLFTVFLLKASGIILPMYIIMWAIGGMYGSIQRHYQDFDNDTSISDSEDEESELMHDAIVAHQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00006 227 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Pral5106g00006 227 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Pral5106g00006 227 SMART ringv_2 19 68 IPR011016 GO:0008270
Pral5106g00006 227 CDD RING_CH-C4HC3_MARCH 20 67 - -
Pral5106g00006 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 79 IPR013083 -
Pral5106g00006 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 194 IPR033275 -
Pral5106g00006 227 MobiDBLite consensus disorder prediction 100 121 - -
Pral5106g00006 227 Pfam Protein of unknown function (DUF3675) 74 188 IPR022143 -
Pral5106g00006 227 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Pral5106g00006 227 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Pral5106g00006 227 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00006 Pral-Chr5106 29327 31819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00006 20 67 C3H Transcription Factor Family AT2G37950 42.857 1.28e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00006 - - gmx:100797029 286.189