Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5106g00005 ATGAAGTCGGCATCAGTCAATTTGGCACGAATTCTAAGTTCAACCTTCAATAAGACGACCAATGTCTCGTTCTCTGACGTTGAGACCAAAGTGGCTCCGGTGTTATTTCAGGCATTTAAGATGATTCCTCAGCTGTCCGAAATCTCATACATTGGGATGGATGGTCTATTTTTCTCATACTACAAAGAACATGATCAAAATCTTGCAATGTACTCTAACTCTTCCATTTCTTCAGCCTCGGGTTCTTCGAAAATCACATACTACGTTCAACCTGTAAATCTTGACACTGGAGGATTATATGGTGAAGCCGTAACATATAAGCATCCTGTTAATACGAGTTGGACCCAGGAAGCAGTCAACAGTTCCAACGGATATGCCTCGTTGGGATACAAGTGGAGTGGCAATCATCAGATTTTATACCTTAATCTTGTCAGTATCTCAAGAACAGGGGTTATCTCCTTAGGACTTCCAGCATCGACAATTACAGACTTTGTCACTCCCACTAGGCGTCAAGGTTCAAGCTTGTATTTGGCTTCCAAAGATGGAAAAGTGCTTCTGCAAGGAATCCAACATGCCCATATAGTATTCTATGATGATACGGCTTCCTTCTATTCAGTGAAACCAAATGGTGAGCTTCTGAGTAATCAGGGCTTCGTCTCATGTAAAGCTGAAGCCACAGCTTCTGTTTTGAAGATTGGGGATACTCAATATTTGACACGCTGCTCATCAATTGATATAATGGGAGTAGAATTGGCGTACGTCTTGGCTATCCCCCAAAATGGATTAGTGACCTTTGTACGTGAGAGTAGAAAACGGGGATTGGTGCTAATGAGTACAATGATAGTGATGATATTAGCCTCTATCTTTAGTTTTCTTTTGTTAAATGCTATAATGGGTCGGCGAGAGATGCGTTTGTGCTTCTCTCTCATCAAACAAATGGAAGCCACTCAGCAAGCAGAGAGGAAGAGTATGAACAAGAGCCTAGCATTTGCTAGTGCTGGCCATGATATTCGTGCTTTCCTTGCTGGCCTTACTGGTTTGATAGAGATGTCCTATGAAGAAGTTATCCCTGGTTCAGAGCTAGAGGCCAATTTGAAACAAATGGGTACTTGCACAGAAGACTTGCTAGGGCTATTGAATTCTATTCTTGATACAAGTAAAATTGAGGCAGGGAAAATGCAGCTTGATGAAGAGGAGTTTGATCTATCCCAAGTCATAGAAGAAGCAACTGATTGGTACTATCCTGCGGCCATGAAAAAAGGTGTCGATCTTGTCTTGGACCATTGCAACGGTTCGGTTATTAGATATTCGCATGTGAAAGGTGACAAGGGAAAGCTTAAACAAGTTTTGTATAATTTGTTAAACAATGCTGTCAAATTTACAAATGAGGGACATGTAGTAGTTCGAGCTTGGGCTCAAAAGCCAAGTTTCCAGAAGTCAATAATGGCTTCTAAAAGATACAATTTTATCAAGCATTTTCCATGCTTATTTTACAAGAAAAATGAATCAGATGTGAAAGTAGAAGTAAGAAATGCAATCCAACGAGAGCCAAACTTGTTGGAGTTTGTGTTTGAAGTAGATGATACAGGAAAAGGAATTCCTAAAGAGAAGCATAAGTCAGTGTTTGATGATTATGTTCAAGTCAAAGAAAATGCTTCAGGACTAGGAGGCACGGGTTTGGGACTTGGTATTGTGCAATCACTGGTACGTTTGATGCATGGGGACATTGGAATTATGGAAAAGGAAATAGGTGAAAAAGGATCATGCTTTAGATTCAACGTCCTCCTTCACGTTTGTGAGACAGTCACAGGTGGTAGTAACACTAAAGAAGATAATGATTTAGGAGGTGACATACATCTCAATCAATTTCAAGGACAAGATATAAACACCCCTAGTTCTGGTTCTAGCATATGTTCCCCCAGCCCAAAATTACCTATTTTCGCCTCTAGTAGGTCAGGGGCTTCTTGCATTATTCTTTTGATACAAAACGAAGAGAGACGAAGGACTACTCGAAGGTTCATGGAGAGCTTAGGGATTAGAGTTAAGGTTGTGAGGCAGTGGGAACATTTGTCTCATACTCTTAAGAAGATCAAGGAGAAGGGGCATAATTCTAACCAGAGCTCCATTGGAACATCAGATACTAGTTCTAGATCTGCATCTCAAAATTCTAATTCCAGAGCCAGAGGATTTCCTTTGAGCGCTACAGATGGAATTTACTATATGCCTTCGATTTTTAACAGGTTAGAAGATAGAGCTTCTTCGGGTCTGGTTCTACTTGTGATTGATTCAATTGCAGGACCCTTTTCAGAACTTAGCAGAATTGTATTTGCATTCAAAAGAGACCTTGGGAGTCCTTGCAAGGTGGTTTGGTTAAATAAGCCACTCTGTGGAGACAGTTTCAAAGCACTTGGTGAGGATGCATTAGATCCTGATGACATTATCTTGTCCAAGCCATTTCAAGGTAGTCGTTTGTTTGAAATTATGAGGCTTCTTCCCGAGTTTGGGGGTAGTTCAACTAATATATCTAGAATTGGAAGAGTAAGGGAGGACACTTTTCACAATAGACTTAGGAAATCATTCAAAGATTGCCACACATCAAGATATCAGTCACCTATATCAGACAGAGCAGAATTTTCCTCATCCAGTGTAAACCCATCTCAAGACTATGGTAATTCATCAAGGAGGGATCAGCTGTATTCTTCTAGCAAGTTCAAAGCAAGGAATTCTCCAATCGACCACAAAGAGATACAAAAGTGCAATTATTCAAACAACGACAAGCCCTTGTGTGGCAAGAAGTTTTTGATAGCAGATGATGTTGAATATCTGCGCAGGATAGCTTTTAAGACCCTGATACATCTAGGTGCAAGTGCAGCTAATGTGAAGGAATGCGAGAATGGCAAAGAAGCAGTAAATCTAGTTGAAGAGAGTTTAAAGGGGGCTTTTCCCTATGATTACATCATAATGGACTGTGAGATGCCCGTAATGGATGGGTTTGAGGCAACGAAGCAGATAAGGAAGATGGAGAAGGGGTATGGGGTTCATGTTCCTATCCTGGCTTTAACAGCTCATACGTCAGGGGAGGAGATCAGCGTGACGAAGGACGCAGGAATGGACGCTCATTTAGGCAAGCCACTTAGACCACACCATTTACTGGCTGCCATTAAAGACATACACAATAATACAGGCTGA 3189 0.4105 MKSASVNLARILSSTFNKTTNVSFSDVETKVAPVLFQAFKMIPQLSEISYIGMDGLFFSYYKEHDQNLAMYSNSSISSASGSSKITYYVQPVNLDTGGLYGEAVTYKHPVNTSWTQEAVNSSNGYASLGYKWSGNHQILYLNLVSISRTGVISLGLPASTITDFVTPTRRQGSSLYLASKDGKVLLQGIQHAHIVFYDDTASFYSVKPNGELLSNQGFVSCKAEATASVLKIGDTQYLTRCSSIDIMGVELAYVLAIPQNGLVTFVRESRKRGLVLMSTMIVMILASIFSFLLLNAIMGRREMRLCFSLIKQMEATQQAERKSMNKSLAFASAGHDIRAFLAGLTGLIEMSYEEVIPGSELEANLKQMGTCTEDLLGLLNSILDTSKIEAGKMQLDEEEFDLSQVIEEATDWYYPAAMKKGVDLVLDHCNGSVIRYSHVKGDKGKLKQVLYNLLNNAVKFTNEGHVVVRAWAQKPSFQKSIMASKRYNFIKHFPCLFYKKNESDVKVEVRNAIQREPNLLEFVFEVDDTGKGIPKEKHKSVFDDYVQVKENASGLGGTGLGLGIVQSLVRLMHGDIGIMEKEIGEKGSCFRFNVLLHVCETVTGGSNTKEDNDLGGDIHLNQFQGQDINTPSSGSSICSPSPKLPIFASSRSGASCIILLIQNEERRRTTRRFMESLGIRVKVVRQWEHLSHTLKKIKEKGHNSNQSSIGTSDTSSRSASQNSNSRARGFPLSATDGIYYMPSIFNRLEDRASSGLVLLVIDSIAGPFSELSRIVFAFKRDLGSPCKVVWLNKPLCGDSFKALGEDALDPDDIILSKPFQGSRLFEIMRLLPEFGGSSTNISRIGRVREDTFHNRLRKSFKDCHTSRYQSPISDRAEFSSSSVNPSQDYGNSSRRDQLYSSSKFKARNSPIDHKEIQKCNYSNNDKPLCGKKFLIADDVEYLRRIAFKTLIHLGASAANVKECENGKEAVNLVEESLKGAFPYDYIIMDCEMPVMDGFEATKQIRKMEKGYGVHVPILALTAHTSGEEISVTKDAGMDAHLGKPLRPHHLLAAIKDIHNNTG 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5106g00005 1062 SMART REC_2 931 1054 IPR001789 GO:0000160
Pral5106g00005 1062 MobiDBLite consensus disorder prediction 703 728 - -
Pral5106g00005 1062 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 313 393 IPR036097 GO:0000155|GO:0007165
Pral5106g00005 1062 SUPERFAMILY CheY-like 930 1058 IPR011006 -
Pral5106g00005 1062 Gene3D - 910 1061 - -
Pral5106g00005 1062 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1056 - -
Pral5106g00005 1062 CDD REC_hyHK_CKI1_RcsC-like 933 1054 - -
Pral5106g00005 1062 ProSiteProfiles Response regulatory domain profile. 932 1058 IPR001789 GO:0000160
Pral5106g00005 1062 Pfam Response regulator receiver domain 934 1055 IPR001789 GO:0000160
Pral5106g00005 1062 SMART HisKA_10 325 391 IPR003661 GO:0000155|GO:0007165
Pral5106g00005 1062 MobiDBLite consensus disorder prediction 872 898 - -
Pral5106g00005 1062 Gene3D - 312 392 - -
Pral5106g00005 1062 PRINTS Bacterial sensor protein C-terminal signature 556 574 IPR004358 GO:0016310|GO:0016772
Pral5106g00005 1062 PRINTS Bacterial sensor protein C-terminal signature 540 550 IPR004358 GO:0016310|GO:0016772
Pral5106g00005 1062 PRINTS Bacterial sensor protein C-terminal signature 522 536 IPR004358 GO:0016310|GO:0016772
Pral5106g00005 1062 SMART HKATPase_4 441 598 IPR003594 -
Pral5106g00005 1062 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 380 594 IPR036890 -
Pral5106g00005 1062 Gene3D - 393 602 IPR036890 -
Pral5106g00005 1062 MobiDBLite consensus disorder prediction 695 728 - -
Pral5106g00005 1062 ProSiteProfiles Histidine kinase domain profile. 332 598 IPR005467 -
Pral5106g00005 1062 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 596 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5106g00005 Pral-Chr5106 23669 27575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5106g00005 4 1059 Histidine Kinase Gene Family AT2G47430 40.000 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5106g00005 HATPase_c 1.7e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5106g00005 - - pcin:129308889 1313.13