Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5106g00001 | ATGAAGGACCTCGACTTCAATGCAGACGTAGCTCTGGCAAAGGAGTTTCTTTCGAACTTCGCAGATGCAAACGGTCAACCCAAATACATGAACATTTTGCAAGACGTTGCTAACCACAAAACTCGAGCTATCCAAATTGACATTGGGGACTTGATCAATTATAAAGATCTAGACGAAGAATTTCTCAGACGTGTGACCGAAAATACTCGGAGGTACATTGGAATTTTTGCTGATGCGATCGACGGCCTTATGCCAGAGCCCACTGAAGCCTTTACGGATGATGATCATGATATATTGATGACACAGAGATCTGACGAAGGAGCGGAAGGTGCTGATGGTTCAGATCCTCTTCAAAAGATGCCTTCTGAGATCAAGCGCTACTTTGAAGTTTATATTAAGGCATCTTCAAAGGGGCGGCCATTTACAATTAGGGAGGTGAAGGCTTCATATATTGGTCAGCTTATAAAGACATCTGGTATTGTGACCCGATGTTCGGATGTTAAACCATTGATGCAGGTAGCTGTTTACACATGTGAAGATTGTGGCTTTGAAATCTACCAGGAGGTAACAGCTCGGGTCTTCATGCCTTTGTTTGAGTGTCCTTCTAAGCGCTGTCATATGAATCAAAGCAAGGGGAATCTCATTCTTCAACTAAGAGCATCAAAGTTCTTGAAATTTCAGGAGGCAAAACTTCAAGAACTAGCTGAACATGTTCCAAAAGGACATATCCCCCGAACAATGACTGTTCATTTAAGGGGAGAGCTCACAAGAAAGGTAGCCCCAGGTGATGTTGTTGAATTATCTGGTATTTTTCTTCCCATACCTTTCACTGGTTACAGAGCAATGCGTGCTGGGCTAGTTGCTGATACTTACTTAGAAGCCATGTCTGTTACCCATTTCAAGAAAAGATATGAAGAGTATGAATTTTTTGGAGACGAAGAAGAGCAGATTTTAAAATTAGCTGAAGATGGCGACATCTACAACAAGTTGGCTAGATCACTGGCTCCTGAAATTTTTGGACATGAAGATATCAAGAAAGCATTGCTTCTTCTTCTTGTTGGTGCTCCTCACAGGAAGTTAAAAGATGGGATGAAGATCAGAGGAGATTTGCATATATGTTTGATGGGTGATCCTGGTGTGGCAAAGAGTCAGCTCCTTAAACACATAATTAACGTAGCACCAAGAGGAGTGTACACCACTGGCAAGGGAAGTAGTGGTGTAGGTCTAACTGCTGCTGTTCAGAAGGATCCAGTGACCAATGAGATGGTTCTGGAAGGTGGAGCATTGGTACTAGCAGATATGGGCATTTGTGCCATTGATGAGTTCGACAAGATGGATGAATCTGATCGTACAGCTATACATGAAGTTATGGAACAGCAGACTGTGAGCATTGCCAAGGCCGGGATCACTACATCCTTGAATGCAAGGACTGCTGTCCTTGCTGCTGCCAATCCGGCATGGGGAAGATATGATCTAAGAAGAACTCCAGCAGAAAATATTAATCTTCCTCCCGCCCTGCTATCAAGATTTGATCTTCTGTGGCTAATCCTCGATCGAGCTGATATGGATAGTGATCTTGAAATGGCTAGGCATATCGTCTATGTCCACCAAAATAAAGAATCTCCTGCTTTGGGATTCACTCCTCTTGAACCATCTGTTCTCCGAGCATATATATCTACTGCAAGAAGATTATCTCCAAGTGTCCCCAGGGAATTGGAAGAGTACATTGCTACTGCTTATTCTAGTATTCGCCAAGAAGAAGCCAAGTCAAGTACTCCCCATTCATACACAACTGTCAGAACTTTACTCAGCATTCTCCGCGTATCAGCTGCATTAGCGAGACTCCGCTTTTCGGAAACTGTCGCTCAGAGTGACGTGGACGAGGCACTGAGGTTAATGCAGATGTCGAAGTTCTCTTTATACTCCGATGAGCGTCAAAGATCTGGTCTAGATGCGATATCTGATATCTATTCTATTCTGCGAGATGAAGCTGCAAGGAGTAACCGGATGGACGTAAGCTATGCCCGCGCCCTCAATTGGATATCTAGGAAGGGCTACAGCGAAGCGCAGCTGAAAGAGTGTTTGGAGGAGTACGCAGCATTAAATGTTTGGCAGATACACCCCCACACTTTTGATATCCGATTCATCGATGCTTGA | 2157 | 0.4381 | MKDLDFNADVALAKEFLSNFADANGQPKYMNILQDVANHKTRAIQIDIGDLINYKDLDEEFLRRVTENTRRYIGIFADAIDGLMPEPTEAFTDDDHDILMTQRSDEGAEGADGSDPLQKMPSEIKRYFEVYIKASSKGRPFTIREVKASYIGQLIKTSGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCHMNQSKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPFTGYRAMRAGLVADTYLEAMSVTHFKKRYEEYEFFGDEEEQILKLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHIVYVHQNKESPALGFTPLEPSVLRAYISTARRLSPSVPRELEEYIATAYSSIRQEEAKSSTPHSYTTVRTLLSILRVSAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDERQRSGLDAISDIYSILRDEAARSNRMDVSYARALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 718 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5106g00001 | 718 | Gene3D | - | 143 | 271 | IPR012340 | - | |
| Pral5106g00001 | 718 | Pfam | MCM OB domain | 143 | 273 | IPR033762 | - | |
| Pral5106g00001 | 718 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 294 | IPR012340 | - | |
| Pral5106g00001 | 718 | FunFam | DNA replication licensing factor MCM7 | 311 | 643 | - | - | |
| Pral5106g00001 | 718 | Pfam | MCM N-terminal domain | 14 | 133 | IPR027925 | - | |
| Pral5106g00001 | 718 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 14 | 647 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | ProSitePatterns | MCM family signature. | 435 | 443 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pral5106g00001 | 718 | FunFam | DNA replication licensing factor MCM7 | 9 | 100 | - | - | |
| Pral5106g00001 | 718 | Gene3D | - | 170 | 224 | - | - | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 367 | 382 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 455 | 468 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 479 | 491 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 427 | 441 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 514 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | FunFam | DNA replication licensing factor MCM7 | 170 | 224 | - | - | |
| Pral5106g00001 | 718 | ProSiteProfiles | MCM family domain profile. | 326 | 532 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | SMART | mcm | 139 | 638 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pral5106g00001 | 718 | Gene3D | - | 311 | 643 | IPR027417 | - | |
| Pral5106g00001 | 718 | Gene3D | - | 10 | 101 | - | - | |
| Pral5106g00001 | 718 | Pfam | MCM AAA-lid domain | 553 | 636 | IPR041562 | - | |
| Pral5106g00001 | 718 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 336 | 645 | IPR027417 | - | |
| Pral5106g00001 | 718 | CDD | MCM7 | 329 | 636 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 120 | 132 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 158 | 169 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 285 | 295 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 176 | 187 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 193 | 205 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pral5106g00001 | 718 | Pfam | MCM P-loop domain | 314 | 536 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5106g00001 | Pral-Chr5106 | 1914 | 7674 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5106g00001 | 1 | 716 | Core DNA Replication Machinery Family | AT4G02060 | 84.777 | 0.0 | 1277 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5106g00001 | K02210 | - | qsu:112007744 | 1327.77 |