Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5104g00013 ATGTCGAAGCGGAAGTTCGGATTCGAAGGCTTTGGCATCAACCGCCAATCGACATATAATTTCGAGAGATCTCAAGCTCCTCAGCGGCTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTTCGAGGATACTGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACAATGGCAATGACAGCAAGAACGATGGCAACAGCGACGATATTGATCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAGAGCCGCGCCGCCTCCGCAGCCGAAAGAGAAGGCAGAGGACAGGTATAGAGATGACGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGCTGACTCTGGCGTCCGATGCTCTGCACGCTGGGTATGACTCCGATGAAGAGGTTTATGCGGCCGCGAAAGCTGTAGACGCGGGAATGATAGATTATGACTCCGACGACAACCCCATTCTTGTCGAGAAGAAGAAAATTGAGCCTATTCCTGCTCTGGACCACAGTTCCATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAGACACCTTCAATATCAGGTATGAGCGAGCAAGATGTTGCTGACTACAGGAAGAGTTTGGCCATTCGTGTATCAGGTTTTGATGTTCCGAAGCCAATTAAGACATTTGAAGACTGCGGTTTCTCTTCACAACTTATGAATGTCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATTCAGTGCCAGGCTTTACCAGTTGTGCTCTCTGGCCGAGATATAATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTCCAGAAGGAAGAAGGTCCAATAGGAGTAATCTGTGCTCCCACTAGAGAACTGGCGCATCAGATATACTTGGAGGCGAAGAAATTTGCAAAATCGCATGGGTTACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTAGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTCGCTACTCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCACTTACAATGATGAGAGCAACTTACTTGGTGCTTGATGAAGCTGATCGGATGTTTGACCTTGGATTTGAGCCACAGGTAAGGTCCATCGTTGGTCAGATCAGGCCTGATCGTCAAACTTTACTTTTTTCTGCAACAATGCCCCGTAAAGTTGAGAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTGGTTCAAGTGATTTCTTCTGATACAGAGAAATTGCCTTGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGCGATGTCTTAGTATTTGCTTCCAAAAAGGCCACTGTTGATGAAATTGAATCACAACTGGCACAAAGAGCTTTTAAAGTGGCAGCTCTGCATGGTGATAAAGATCAAGCTTCTCGAATGGATATCTTACAGAAGTTTAAATCTGGTGCCTACCATGTTCTTATTGCGACTGATGTTGCTGCTCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCATAAAGAAGCACGTTTTGCTGGTGAGCTGGTTAATAGCTTAGTAGCAGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGACGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAGGAAAAGTAAAGGGAGGGGAGGGGGTGGCGGTAGAGGTGTGCGTGGAGTGGATTATGGCTTGGGCATTGGATACACTCCAGAGTCCAATAACCCTTCCCCAAGCACAGCAAGTCGATCTGCCGCTGTAAACTCACTGCGGACAGGGATGATGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCATCAAACTCTCAAAACCAATCCTACAGTAGCAGTACAAGTATGCCTGCTAACAAGAGACCGGCCCTCCCTGGCTTTGTATCTGGTGGGTCGATTGGCGGTGATTTAAACACTAATCAGACTCCTGCTGCATCCAGACCCGCAACTTCGGCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGGTGCTCGTCAGAGGAATAACGAGAGTTCCAAGCCTAGAGAAAGGAGGCGGCCTTCTGGGTGGGACAGATAG 2316 0.4655 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNFEDTDLDNIEYDDNDAPKDGNNGNDSKNDGNSDDIDPLDAFMEGIHEEMRAAPPPQPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASDALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPILVEKKKIEPIPALDHSSIEYEPFNKDFYEETPSISGMSEQDVADYRKSLAIRVSGFDVPKPIKTFEDCGFSSQLMNVIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKSHGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAQRAFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITHKEARFAGELVNSLVAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKSKGRGGGGGRGVRGVDYGLGIGYTPESNNPSPSTASRSAAVNSLRTGMMAQFRSNFVAASSNSQNQSYSSSTSMPANKRPALPGFVSGGSIGGDLNTNQTPAASRPATSAVNASSHNSGVGARQRNNESSKPRERRRPSGWDR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5104g00013 771 MobiDBLite consensus disorder prediction 652 668 - -
Pral5104g00013 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 719 754 - -
Pral5104g00013 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Pral5104g00013 771 CDD DEADc_DDX42 240 436 - -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 755 771 - -
Pral5104g00013 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 691 771 - -
Pral5104g00013 771 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 614 668 - -
Pral5104g00013 771 SMART helicmild6 488 569 IPR001650 -
Pral5104g00013 771 Gene3D - 192 436 IPR027417 -
Pral5104g00013 771 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 71 115 - -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 13 31 - -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 1 115 - -
Pral5104g00013 771 MobiDBLite consensus disorder prediction 691 705 - -
Pral5104g00013 771 CDD SF2_C_DEAD 447 579 - -
Pral5104g00013 771 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 193 609 - -
Pral5104g00013 771 Gene3D - 437 613 IPR027417 -
Pral5104g00013 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Pral5104g00013 771 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Pral5104g00013 771 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Pral5104g00013 771 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Pral5104g00013 771 SMART ultradead3 248 450 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5104g00013 Pral-Chr5104 68779 73596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5104g00013 229 585 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 9.07e-62 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5104g00013 K12835 - gmx:100814854 1255.74