Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5104g00011 ATGGGAGTTTCTTCACAGCCTTCGCTTGCTCCCTTTTCTTTCAAAGACTTGGTGAAGAAGGGGGCTCAAGTTGAAACCCAGAACTCGTCTTGTGGGCATCTGCGGAGAAAAGTGACGGAATCTCAGAAGGCAGTGAGCAGAAAAAGCGTTAAGAGCAGAAGGCGAGGAAGGATTCTAATGAAGAGGAGGGCTCGCTTAATGGAAGGTTCTAGAAGAGGAGCCAACAAGATGGAGAGGAGGATGACGAAGTTGAAGAGGCTCATACCCGACGGCGAGCGCATGGGGTTGGATGGACTCTTCAGAAAGACGGCCGATTACATTTTGGCTTTGCAAATGAGAGTGAGGGTCATGCAGATTATGGTTAAGGTAGTGACGGCTTCTGATCAGTGA 390 0.4923 MGVSSQPSLAPFSFKDLVKKGAQVETQNSSCGHLRRKVTESQKAVSRKSVKSRRRGRILMKRRARLMEGSRRGANKMERRMTKLKRLIPDGERMGLDGLFRKTADYILALQMRVRVMQIMVKVVTASDQ 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5104g00011 129 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Pral5104g00011 129 CDD bHLH_AtIBH1_like 68 121 IPR044549 GO:0006355
Pral5104g00011 129 MobiDBLite consensus disorder prediction 25 55 - -
Pral5104g00011 129 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 122 IPR036638 GO:0046983
Pral5104g00011 129 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 36 124 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5104g00011 Pral-Chr5104 50425 50933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5104g00011 59 128 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 50.704 1.58e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5104g00011 - - gmx:100794627 112.849