LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5103g00015	ATGGATTCCAAGATGATATGGGAGTCCGCAGCAAATAAAAGTGAGGACGATATTTGCGTGAGGAAAGGTCCATGGACTGTTGAAGAGGACACCATTCTCGCCAATTACGTGACTACTCATGGCGAAGGTCGGTGGAATTTTGTCGCTCGCTGTGCAGGTCTGAATAGAACGGGCAAAAGTTGCAGACTGAGATGGCTAAACTACTTGCGTCCCGATGTTCGGCGCGGAAATATCACACTCCAGGAACAGATATTGATTCTCGACCTCCATTCTCGCTGGGGAAATAGGTGGTCTAAAATCGCGGAGCAATTGCCAGGGAGAACAGACAACGAGATAAAAAATTATTGGAGAACCAGAGTGATGAAGCAGGCCAAGCAGCTCAAGTGTGACGTCAACAGCAAACAGTTCAGAGACGCCATGCATTACGTTTGGATTCCCCGCATGCTGGAGCGGATTCGGGCCTCGTCCGACTATCAGCATAGCTCGAGAGCAGAGTGGACAAGACCCAATTATGCTAAGCTCCAAGTTGCTTCGAATTCAGGCAGCAGTGAAACAACGGATCATCCAACGGTAAACGGGTCGGTGTCCCAGACAGTAGAGCAGGAAGACTCGCTGGAGAATCTATGGAGCGATGAGAATATATGCTTCTCTGCTCTTTCATTCTTTTCTGTGGGGCAGTGGGGCCTCTTCCACGGCCTCCGTGAAAAGTGTGATCTCCGCGAAATTGCTGTGTTGACGCGAAGTAGTGAAGGAAAACGGCGTTAA	765	0.4954	MDSKMIWESAANKSEDDICVRKGPWTVEEDTILANYVTTHGEGRWNFVARCAGLNRTGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDAMHYVWIPRMLERIRASSDYQHSSRAEWTRPNYAKLQVASNSGSSETTDHPTVNGSVSQTVEQEDSLENLWSDENICFSALSFFSVGQWGLFHGLREKCDLREIAVLTRSSEGKRR	254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5103g00015	254	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	20	199	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Pral5103g00015	254	CDD	SANT	24	69	IPR001005	-
	Pral5103g00015	254	Gene3D	-	22	74	-	-
	Pral5103g00015	254	FunFam	MYB transcription factor	79	142	-	-
	Pral5103g00015	254	MobiDBLite	consensus disorder prediction	177	198	-	-
	Pral5103g00015	254	SUPERFAMILY	Homeodomain-like	20	116	IPR009057	-
	Pral5103g00015	254	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Pral5103g00015	254	ProSiteProfiles	Myb-like domain profile.	21	69	IPR001005	-
	Pral5103g00015	254	SMART	sant	74	122	IPR001005	-
	Pral5103g00015	254	SMART	sant	21	71	IPR001005	-
	Pral5103g00015	254	Pfam	Myb-like DNA-binding domain	75	118	IPR001005	-
	Pral5103g00015	254	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Pral5103g00015	254	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	73	IPR017930	-
	Pral5103g00015	254	Gene3D	-	79	120	-	-
	Pral5103g00015	254	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Pral5103g00015	254	CDD	SANT	79	118	IPR001005	-
	Pral5103g00015	254	FunFam	Myb transcription factor	22	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5103g00015	Pral-Chr5103	52146	53526	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5103g00015	18	162	MYB Transcription Factor Family	AT1G48000	71.724	8.97e-78	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pral5103g00015		Myb_DNA-binding	1.1e-16	CL0123