Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5101g00008 ATGGAAGCTAGATCTGGCCCTGAAGCTTTTCACTTTTATGGAATTGGTCCGTCGGATTTGCGGGGAGTGGGGAAGAGGTCTGTTGAATGGGATTTGAACGACTGGAAATGGGATGGTGATCTTTTTATAGCTAGCCCGCTGACACCGGTGCCAGTAGATAGCGTGGGCCGACAATTTTTCCCTCTTGGGTCTGGGATCCCCGTGGCCGGAGGGTCCTCTAACAGTTCTTCTTCTTGCTCGGATGAAGTAAATCTGGGGATTGACCAGCGGAAGAAGGAAGGAGAAAGGAAAAGGAGGGTTATTGTGGTGGAGGATGAAAACTTGAATGAGGGAGCTGGTGGCCTTAGCTTAAAGCTTGGGGGGCATGACTCTGCAGATGCTGATAGGGAGATGGCTACTTGGGAAGGAAAGAATGGAAAGAAGACCAGATTAGCTGGAGGCACTTCAAATCGAGCTGTTTGTCAGGTGGAAGACTGTGGCGCAGATCTAAGCAGTGCTAAGGATTATCATAGGCGCCATAAAGTTTGTGAGATGCACTCAAAGGCCAGTAGGGCGCTTGTGGGGAATGTGATGCAGCGGTTCTGTCAGCAATGTAGTCGGTTTCACATCCTTCAGGAGTTTGATGAAGGAAAGAGAAGTTGTCGAAGACGCTTGGCAGGCCACAATAAAAGGAGGAGAAAAACAAATAATGATGCTGTTCCGAATGGCAGTTCAATAAATGATGATCAGACAAGCAGTTGCATGTTGCTTACACTGTTGAAGATACTTTCAAATGTGCATTCTAACAGGTCAAATCAGACCACAGATCAGAATCTGCTATCTCATCTTGTAAAGAGCCTAGCTAGTCAAAATGGTGAACATGGGGCCAGGAGCTTGTCTAACCTTTTGCGGGAACCGGAAAATATGTTGAAAGAGGGGAGTTCTCCTGGTAAGTCCGATGTGGTTTCTGCTTTATTCTCAAATGGTTCTCAAGTCTCTCCAACTGTGATAAGACAACCGCAAACAATATCTATGACTGAAATTCAACATCAAGGGATGCGTGATGCCGGGGCTGCTGATCAACAGACCATGTCTTCTACTAAACCTAGCATTACAAACAGTCCTCCAGTTTACTCAGAAGCCAGGGATAGTGTTGCTGGACAGGCTAAGATGAATAATTTTGATTTGAATGACACATATATTGACTCAGATGATGGCATAGAAGATATTGAAAGATTGCCTGTCTCTGCAAACCTTGGGGCTAGTTCCCTTGATTACCAGTGGGTGCAACAAGACTCTCATCAATCAAGCCCACCTCAGACAAGTGGAAATTCAGATTCTGCATCTGCGCAGTCCCCTTCTAGTTCAAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTTAAGCTCTTTGGTAAAGAACCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGACATTGAGAGCTACATACGGCCTGGATGTATTGTTTTCACTATTTATCTGCGTCAGACGGAGGCTGTATGGGAGGAGCTTTGCTATGATCTTACTTCGAGTTTGAATAGGCTTATTGATGTCTCAGAGGGTGACTTTTGGAGAACTGGATGGGTTTACACAAGAGTGAAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAGATAAATCCTTACCTTTGAGAAGTAAAAATTACAGTAAAATTCTGAGTGTTAGTCCGATTGCTGTACCAGCATTCAAAACAGCTCAATTTTCAGTGAAGGGCATTAATCTGATTCGCCCAGCTACTAGGTTATTATGTGCTCTTGAAGGGAAATATATGGTCTGTGAAGATGCTCAGGACCAAATGGAGCAGTGCGCCAAAGAGCTTGATGAGCTCCAGTGCGTCCAATTTTCATGTTCTGTTCCTGTGATGAATGGAAGGGGATTTATTGAGATTGACGACCAGGGCTTGAGCAGCAGCTTTTTTCCTTTCATAGTTACTGAAGAGGATGTTTGCTCAGAAATCTGTGCGCTTGAGCCTCTACTAGAATCAGCCAAAGCTGATTCTGATATCGGAGGATCTGGAAAATTTATGGCCACAAGCCAAGCCATGGATTTTATCCATGAAATGGGCTGGCTTCTCCACAGGAGCCAATTGAGATCTAAGCTGGTTCACCTGAACTCTGATTTAGATCTTTTTCCATTAAAACGGTTCAAGCAGCTCATGGAGTACTCTATGGACCATGATTGGTGTGCAGTGGTGAAGAAACTATTGAACCTATTACTTGGTGGCACAGTGGATGCAGGTGATCACCCATCGCTATATTTGGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTAAGGAGGAATAGCAGGCAGTTGGTGGAGTTGCTTTTGAGATATGTCCCCGATATGATTTCTGATAAACGAGGACCTGAAAACGAGGCACTAGCTGATGTTGGGAACCAGAGCTTCTTGTTTAGACCTGACATTGTTGGTCCTGCGGGCTTGACACCACTTCATATTGCAGCTGGGAAGGATGGTTCTGAGGATGTATTGGATGCTTTAACTAATGATCCTTGCATGGTAGGAATTGAAGCATGGAAGAGTTCACGTGACAGCACAGGCTTTACACCTGAAGATTATGCACGCTTACGTGGTCATTATGCATACATTCACTTGGTTCAGAAGAAAATCAACAAGAGACAAGCAGCAGCAGCATCTCATGTGTTGGTGGATATCCCTAGCAATCTGACTGAGTCTAGTATACATCAGAAGCAAACCGAATCTTCCACTAGCTTTGAGATCGTAAAGGCAGAAGGAAGCCGTGTGCAAGGCCATTGCAGACTTTGCGACCATAAGTTCTCTTGTAGGACTGCAGTTGGAAGGTCTTTAGTGTACAAACCTGCCATGCTCTCAATGGTGTGTGTAGCGGCAGTGTGTGTCTGCGTGGCCCTCCTGTTCAAAAGCTCACCTGAAGTTCTGTATGTGTTCCAACCCTTCACGTGGGAGTCGCTGAATTTCGGAACAAGCTGA 3036 0.4513 MEARSGPEAFHFYGIGPSDLRGVGKRSVEWDLNDWKWDGDLFIASPLTPVPVDSVGRQFFPLGSGIPVAGGSSNSSSSCSDEVNLGIDQRKKEGERKRRVIVVEDENLNEGAGGLSLKLGGHDSADADREMATWEGKNGKKTRLAGGTSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNGSSINDDQTSSCMLLTLLKILSNVHSNRSNQTTDQNLLSHLVKSLASQNGEHGARSLSNLLREPENMLKEGSSPGKSDVVSALFSNGSQVSPTVIRQPQTISMTEIQHQGMRDAGAADQQTMSSTKPSITNSPPVYSEARDSVAGQAKMNNFDLNDTYIDSDDGIEDIERLPVSANLGASSLDYQWVQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVFTIYLRQTEAVWEELCYDLTSSLNRLIDVSEGDFWRTGWVYTRVKHQIAFIFNGQVVIDKSLPLRSKNYSKILSVSPIAVPAFKTAQFSVKGINLIRPATRLLCALEGKYMVCEDAQDQMEQCAKELDELQCVQFSCSVPVMNGRGFIEIDDQGLSSSFFPFIVTEEDVCSEICALEPLLESAKADSDIGGSGKFMATSQAMDFIHEMGWLLHRSQLRSKLVHLNSDLDLFPLKRFKQLMEYSMDHDWCAVVKKLLNLLLGGTVDAGDHPSLYLALSEMGLLHKAVRRNSRQLVELLLRYVPDMISDKRGPENEALADVGNQSFLFRPDIVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSSRDSTGFTPEDYARLRGHYAYIHLVQKKINKRQAAAASHVLVDIPSNLTESSIHQKQTESSTSFEIVKAEGSRVQGHCRLCDHKFSCRTAVGRSLVYKPAMLSMVCVAAVCVCVALLFKSSPEVLYVFQPFTWESLNFGTS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5101g00008 1011 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Pral5101g00008 1011 Pfam SBP domain 154 227 IPR004333 GO:0003677
Pral5101g00008 1011 MobiDBLite consensus disorder prediction 422 455 - -
Pral5101g00008 1011 Gene3D - 729 906 IPR036770 -
Pral5101g00008 1011 MobiDBLite consensus disorder prediction 218 240 - -
Pral5101g00008 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 894 IPR044817 GO:0003677
Pral5101g00008 1011 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Pral5101g00008 1011 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Pral5101g00008 1011 Coils Coil 614 634 - -
Pral5101g00008 1011 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Pral5101g00008 1011 SUPERFAMILY Ankyrin repeat 777 895 IPR036770 -
Pral5101g00008 1011 MobiDBLite consensus disorder prediction 344 376 - -
Pral5101g00008 1011 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5101g00008 Pral-Chr5101 55116 62468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5101g00008 24 1011 SBP-box Gene Family AT3G60030 56.517 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5101g00008 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5101g00008 - - gmx:100814273 1546.56