Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5101g00007 ATGGCTGGAGACGTGAGCAAAAACGACCGCAATGTCATCGTTTGTGCGCCGGAGGCCTCCGGTAGCGGAAGAGCGGAGCCGCAATACGTCTCAGCGAAGATCTCTGTGTGGTGGGACATTGAGAACTGCCAAGTTCCAAAGGGCTGCGACCCTCACGCCATTGCTCAAAATATTAGTTCTGCACTCGTCAATATGAACTATCGTGGTCCCGTCTCCATCTCCGCCTACGGCGACACAAGTCGGATCCCATCCTTCGTTCAGAAAGCACTTTCTAGCACCGGGATTTCTCTTAACCACATTCCAACTGGTGTGAAAGATGCCAGTGATAAGAAAATTCTAGTTGACATGTTGTTATGGGCGGTAGACAACCCTGCTCCCGCAAATTATTTGCTAATTTCTGGAGACAGGGATTTCTCTAATGCTCTGCATCAGTTGCGCCTGAGAAAATACAACATTCTTCTAGCACAACCACCGAAAGCATCAGCTCCTCTAGTTGCAGCAGCAAAATGTGTTTGGCTCTGGACGAGCCTTTTATCTGGAGGAGCCCCACTATCAAGTGGCGAATCATCCTGCCTTGCAAGCGGTAACTATGTCTCTCATTTTGAGAGGATGGAAAACCCGGTTGTTGAGCCAAATCAAATGAGTCAGCCACTGGTTCTCAATTCTGAAAACCTTGACATGGGCAGTCAAAATAACCGTACTACTAGAAGCGTTGGTGATTTGAAACACAAAGTAAAATATGTTTTGAAAGCTGACAATCAACCCAATCTATCAAGCTCTTCAAGCTTACCTGTTACAGTTTCAGAGGGTAAGAACAATGATCCTCTTAAACTAGCACAGTCACCGGTGAAGCTGTTCCGAAAAGCTCCACACGAATTCTTTGTTAGTAGCAATCCCGTAGTCCCAAACGGTAGGTTTACTCCTAACTTTCCAAGCAACCAAGATGGCTCAGAAAATAAAAGGAGCAACTCTAATGAAATTTCCCAGGATCTCTATCATGGTTCTTTGAGGTCAAACAACCTTCATATACAACCCGTGTCTGGACCGAATTTGCCTCTTCCTGACTCCCATGCTCGAACATTTCAACCCGTCCCTTCTTATTCAGCTGGATCTAAATTGTCTACGGCCCCAAATTCATTTCATGATATACCTAAGCCACATGATTCTCCATATCCTAACAATGTCAAAAGTACTCTTTCTCATCAGCGAACCAGAGAAGATTCTAATCCAAGCACTACTCAATCTCCTAATCTACATAGCTTCCATGCACCCCCAGCAGGCTACGACCCACCATGTGTCCAAGCATTTCATTGTGAGAATTTGAACCTGAGGCATCCTCGTGGTTCCAAACATATGCCTACTCCCTCCGTCACTGGAATTGCCAATACCAGTTCTAAGAATATTACCTTGGGAGTTGAGGGATTTCCACCACCTTCTGAGTATGAGCGAGGCCTCGTGGGTGCTATTCTACTAGCCTTAAACACTCTGAAGGTTGAAAAGATTATGCCAACTGAAGCAAATATAACTGATTGCATTTCGTATGGAGATTCGAAATATCGAACCACTGATGTCAAGAAGGCTTTAGATTGTGCAATCAAGCTAAATGCGGTAATAAAACAGAGACTAGGTGCATTAAATTTTTATGTTGGTAGAAACGAGAAACTATGGAATTGTGTAAACATTATATGTGGAAATGTTAGTCAGTATCCAAATACAACGTGGGATCGAATACAAGAGTTCCTTGCTTCATCATCTGGACGATCAGCAATGTTGTCTTCCCAGTGCAGATATGAAGCATCTTTAATTCTAAGGAAAGAATGCCTTAAAGAGCTTATGTTAGGAGAGGTACTTCAGATCTTGAATATGATCATCACTGTCAAGAAATGGATTATAATTCATCGGTCTGGATGGCAGCCGATAACTATTACGCTTAATGAGAGTGGAGATGATACAGGAAGTGTTCCAGAGTTAAAGTAA 1977 0.4355 MAGDVSKNDRNVIVCAPEASGSGRAEPQYVSAKISVWWDIENCQVPKGCDPHAIAQNISSALVNMNYRGPVSISAYGDTSRIPSFVQKALSSTGISLNHIPTGVKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLRLRKYNILLAQPPKASAPLVAAAKCVWLWTSLLSGGAPLSSGESSCLASGNYVSHFERMENPVVEPNQMSQPLVLNSENLDMGSQNNRTTRSVGDLKHKVKYVLKADNQPNLSSSSSLPVTVSEGKNNDPLKLAQSPVKLFRKAPHEFFVSSNPVVPNGRFTPNFPSNQDGSENKRSNSNEISQDLYHGSLRSNNLHIQPVSGPNLPLPDSHARTFQPVPSYSAGSKLSTAPNSFHDIPKPHDSPYPNNVKSTLSHQRTREDSNPSTTQSPNLHSFHAPPAGYDPPCVQAFHCENLNLRHPRGSKHMPTPSVTGIANTSSKNITLGVEGFPPPSEYERGLVGAILLALNTLKVEKIMPTEANITDCISYGDSKYRTTDVKKALDCAIKLNAVIKQRLGALNFYVGRNEKLWNCVNIICGNVSQYPNTTWDRIQEFLASSSGRSAMLSSQCRYEASLILRKECLKELMLGEVLQILNMIITVKKWIIIHRSGWQPITITLNESGDDTGSVPELK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5101g00007 658 PANTHER LIMKAIN B LKAP 24 528 IPR024768 GO:0005777|GO:0010468
Pral5101g00007 658 Gene3D - 28 176 - -
Pral5101g00007 658 Pfam OST-HTH Associated domain 593 646 IPR025677 -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 339 424 - -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 361 378 - -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 252 276 - -
Pral5101g00007 658 Pfam NYN domain 33 168 IPR021139 GO:0004540
Pral5101g00007 658 MobiDBLite consensus disorder prediction 252 275 - -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 391 420 - -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 300 325 - -
Pral5101g00007 658 MobiDBLite consensus disorder prediction 297 325 - -
Pral5101g00007 658 CDD PIN_limkain_b1_N_like 33 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5101g00007 Pral-Chr5101 42016 44887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5101g00007 25 217 C2H2 Transcription Factor Family AT5G61190 71.795 8.29e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5101g00007 - - pcin:129310578 1019.99