Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5100g00015 ATGGGGACCGAAAATGGCCAAGACGAAGCAAGCACATCAAAGAATGAAGCAGGAACGAGCACCAACGGAGAAAATAGGAGTCAAACCGAAAAGGCCGAGACAGTTCCGTTTCAAAAGTTGTTCACATTTGCCGACTCTACAGATATGTTGTTGATGGTTGCTGGCACCATTGGGGCCATTGGAAATGGTGCGGCTTTGCCTCTCATGACGTTGCTGTTCGGCGAGATGATTGACTCCTTCGGAAATAACCAGGACAGCGCTGACATGGTCGATAGAATTTCCAAGGTTTCTCTGAAGTTTGTGTACTTGGCTGTGGGAAGTGGAGTGGCAGCTTTTCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGGCAGGCCGCGAGAATAAGGGGTTTGTATTTGAAAACAATTTTAAGACAAGATGTGGCTTTCTTTGATATGGAAACAAACACCGGAGAGGTGATCGGTAGAATGTCAGGCGACACTGTTCTTATACAAGACGCCATGGGTGAAAAGGTTGGAAAATTTCTGCAGCTAATGTCAACATTCATTAGCGGTTTTGTAGTAGCATTTGTGAAAGGGTGGCTTCTCAGTCTTGTCATGTTATCCACTCTTCCACCTCTTGTCGTGTCTGGTGCGGCTATGGCCTTGATTATAGGGAGGATGGCATCGCAGGGCCAAACCGCGTATGGAAAAGCTGCAAACGTCGTTGAACAGACAATTGGCGCAATTAGAACGGTGGCATCCTTCACGGGAGAGAAACATGCAGTATCTGGTTACAGCAGGTTTCTTGTGGATGCATACAGAGCAGGAGTTCAGGAAGGTTTGGTCGCAGGAGCGGGGATTGGGGCAGTTATGTTCGTGATTTTCTGTGGCTATGCTTTGGCCATATGGTATGGTGCAAAGTTGATAGTGGATAAAGGATACAACGGGGGTACAGTGATTACTGTGATCTTTGCCGTCTTAACTGCTTCCATGAATCTTGGTCAAGCAGCCCCATGTCTGAGTGCTTTTGCGGCAGGCCAAGCTGCAGCGTTTAAAATGTTCAGGACCATTGAGAGAAAACCGGAGATAGATTCTTATGATGAAAAAGGGAAAATATTAGAAGATATTCAAGGGGAAATAGAGTTGAAGGAAGTTTATTTCAGCTACCCAGCTAGACCTGGGGAGCTGATTTTTGATGGCTTCTCTCTTAAAATACAAAGTGGAACTACTGCAGCTTTGGTTGGACAAAGCGGAAGTGGAAAGTCCACTGTCATCAGTTTAATAGAAAGATTTTATGATCCGCGGGACGGTGAAGTTCTCATAGATGGCATTAACTTGAAAGAATTCCAACTCAGATGGATTAGAGGGAAAATTGGACTTGTCAGTCAAGAGCCTGTCCTTTTTGCATCTAGCATAAAGGATAACATCGCTTATGGAAAGGAGGGAGCAACAACTGAAGAGATAAAAGCTGCAGCTGAACTTGCAAATGCAGCTAAATTCATTGATAAATTACCACAAGGATTGGACACTATGGTCGGTGATCATGGAACTCAGTTGTCCGGGGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTCAAAAATCCAAAAATCCTACTTCTAGATGAAGCTACGAGTGCACTTGATGCAGAGTCTGAAAGGATTGTGCAAGAGGCCCTTGACAGGATCATGGTAAACAGAACTACCGTTGTTGTGGCACACCGCTTAAGCACAGTGAAAAATGCCGACATGATTGCTGTGATTCACAGAGGGAAGATGGTCGAGAAAGGAACACACACAGAATTGCTCAAGGATCCTGAAGGAGCATACTCTCAACTTATACGCCTACAAGAAGTAAATAAGGAGTCAGGAGATGGTGTAGATCATGAAAACAGGCATGAACTTTCCTCAGAGTCCTTAAGGCATTCTAGTCAGATAAGGTCATTAGGAAGATCCATAAGTCGAGGATCATCAGCTGGAAATAGCAGCCGCCACTCATTTTCAGTTGCCTTTGGCTTGCCTACTGCGGTCAACGCCACTGATCCTGAAGCCGAACTTGAAAATCCAGAAACCAAAGAACAATCACCAAAGGTTCCACTCCGCCGCCTTGCTTACCTCAACAAGCCAGAGATACCAGTGCTTCTGCTTGGATCTTTAGCTGCCATTGTGAATGGCGCCGTACTTCCTATATTTGGCATTTTGATTTCCAGTGCAATCAAATCGTTCTACGAGCCAGCTGATGAAATGAAAAAGGATTCCAGATTCTGGGCATTAATGTTTGTGGTACTTGGTATTGCATCTTTGTTGGCACTTCCTGCTCGAGGATACCTCTTTGGCGTTGCGGGATGCAAGTTAATCCAACGCATCAGGCAGATGTGCTTTGAGAAGGTAGTAAACATGGAGATAGGCTGGTTTGATGATCCTGAGCATTCAAGTGGTGTAATTGGAGCAAGGCTCTCAGGAGACGCAGCAACTGTGCGAGCACTTGTCGGGGATGCTCTGGGACAACTGGTTGAGAATCTCGCATCAATACTGGCGGGTTTGATAATTGCTTTCATTGCAAGCTGGCAGTTAGCTTTTATTATTCTTGTACTGCTTCCCTTGATTGGAGTAAACGGATATGTTCAAGTGAAATTCATGAAAGGGTTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGTCAAGTTGCTACCGATGCTGTTGGAAGTATAAGAACAGTAGCTTCTTTTTGTGCTGAAGAAAAGGTGATGGAACTATACAGAAAGAAATGTGAAGGGCCTATGAAATCAGGGATCCATCAGGGCTTGATCAGCGGAACAGGATTTGGGGTATCGTTTTTCCTTCTCTTCGCCGTCTATGCAACCAGCTTTTATGCGGGAGCTAAACTCGTGGAGGACGGCAAAGCGACATTCTCAGATGTTTTTCGGGTTTTCTTCGCCTTAACTATGGCAGCTATAGCAGTTTCCCAATCAAGCTCTTTTGCGCCTGATTCTGGCAAAGCCAAGTCAGCTGCCGCTTCTATATTTGGAATGATGGACAGGAAATCGATGATAGATCCGAGCGACGAGTCAGGAGCCACATTGGATAGCGTCAAGGGAGAAATCGAGCTTCGTCATATTAGCTTCAAGTATCCATCGAGGCCAGATATACAGATTTTCCGAGACCTTAACTTGGCCATACACTCTGGAAAGACCGTAGCGCTTGTAGGTGAAAGTGGAAGTGGAAAATCGACGGTGATTTCATTATTACAAAGATTTTACGATCCTGATTCAGGCTCAATTACACTCGACGGAGTAGAGATTCAAAAGTTGCAACTCAAATGGTTAAGGCAACAAATGGGTCTTGTGAGTCAAGAGCCAATATTGTTCAATGACACCATCCGTGCCAATATTGCCTACGGAAAGGGAGGCAATGCAACTGAAGGAGAAATCATAGCTGCCGCCGAACTAGCCAATGCTCATAAGTTCATTAGCGGCCTACAACAAGGATATGATACAGTAGTGGGAGAAAGGGGAATTCAATTATCAGGTGGGCAAAAGCAAAGGGTAGCAATCGCACGTGCTATAATTAAAAGTCCCAAGATTTTGTTATTAGATGAAGCAACAAGTGCATTGGACGCAGAGTCAGAGAGGGTAGTTCAAGACGCATTGGATAGAGTAATGGTGAATAGAACCACCGTGGTTGTGGCCCATCGTTTATCGACAATAAAAAATGCAGACGTTATTGCAGTGGTTAAAAATGGAGTCATAGTTGAGAAAGGGAGGCATGAGACCCTGATTAACATCAAGGACGGATTTTATGCTTCTTTAGTGCAGCTTCATGCGAGCGCTTCCACATCATGA 3834 0.4512 MGTENGQDEASTSKNEAGTSTNGENRSQTEKAETVPFQKLFTFADSTDMLLMVAGTIGAIGNGAALPLMTLLFGEMIDSFGNNQDSADMVDRISKVSLKFVYLAVGSGVAAFLQVACWMVTGERQAARIRGLYLKTILRQDVAFFDMETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLMSTFISGFVVAFVKGWLLSLVMLSTLPPLVVSGAAMALIIGRMASQGQTAYGKAANVVEQTIGAIRTVASFTGEKHAVSGYSRFLVDAYRAGVQEGLVAGAGIGAVMFVIFCGYALAIWYGAKLIVDKGYNGGTVITVIFAVLTASMNLGQAAPCLSAFAAGQAAAFKMFRTIERKPEIDSYDEKGKILEDIQGEIELKEVYFSYPARPGELIFDGFSLKIQSGTTAALVGQSGSGKSTVISLIERFYDPRDGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATTEEIKAAAELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVKNADMIAVIHRGKMVEKGTHTELLKDPEGAYSQLIRLQEVNKESGDGVDHENRHELSSESLRHSSQIRSLGRSISRGSSAGNSSRHSFSVAFGLPTAVNATDPEAELENPETKEQSPKVPLRRLAYLNKPEIPVLLLGSLAAIVNGAVLPIFGILISSAIKSFYEPADEMKKDSRFWALMFVVLGIASLLALPARGYLFGVAGCKLIQRIRQMCFEKVVNMEIGWFDDPEHSSGVIGARLSGDAATVRALVGDALGQLVENLASILAGLIIAFIASWQLAFIILVLLPLIGVNGYVQVKFMKGFSADAKMMYEEASQVATDAVGSIRTVASFCAEEKVMELYRKKCEGPMKSGIHQGLISGTGFGVSFFLLFAVYATSFYAGAKLVEDGKATFSDVFRVFFALTMAAIAVSQSSSFAPDSGKAKSAAASIFGMMDRKSMIDPSDESGATLDSVKGEIELRHISFKYPSRPDIQIFRDLNLAIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGSITLDGVEIQKLQLKWLRQQMGLVSQEPILFNDTIRANIAYGKGGNATEGEIIAAAELANAHKFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHASASTS 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5100g00015 1277 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5100g00015 1277 SUPERFAMILY ABC transporter transmembrane region 692 1016 IPR036640 GO:0005524|GO:0016020
Pral5100g00015 1277 Pfam ABC transporter 1051 1200 IPR003439 GO:0005524
Pral5100g00015 1277 Gene3D ABC transporter type 1, transmembrane domain 98 1006 IPR036640 GO:0005524|GO:0016020
Pral5100g00015 1277 Gene3D - 1022 1276 IPR027417 -
Pral5100g00015 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1270 IPR027417 -
Pral5100g00015 1277 CDD ABC_MTABC3_MDL1_MDL2 375 613 - -
Pral5100g00015 1277 ProSitePatterns ABC transporters family signature. 1172 1186 IPR017871 GO:0005524|GO:0016887
Pral5100g00015 1277 MobiDBLite consensus disorder prediction 637 658 - -
Pral5100g00015 1277 CDD ABC_MTABC3_MDL1_MDL2 1032 1270 - -
Pral5100g00015 1277 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1269 IPR003439 GO:0005524
Pral5100g00015 1277 SUPERFAMILY ABC transporter transmembrane region 39 359 IPR036640 GO:0005524|GO:0016020
Pral5100g00015 1277 MobiDBLite consensus disorder prediction 617 636 - -
Pral5100g00015 1277 FunFam ABC transporter B family member 1 690 998 - -
Pral5100g00015 1277 FunFam ABC transporter B family member 9 39 371 - -
Pral5100g00015 1277 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5100g00015 1277 SMART AAA_5 1059 1252 IPR003593 GO:0016887
Pral5100g00015 1277 SMART AAA_5 402 574 IPR003593 GO:0016887
Pral5100g00015 1277 Pfam ABC transporter 394 542 IPR003439 GO:0005524
Pral5100g00015 1277 MobiDBLite consensus disorder prediction 1 32 - -
Pral5100g00015 1277 PANTHER ABC TRANSPORTER B FAMILY 15 615 IPR039421 -
Pral5100g00015 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 613 IPR027417 -
Pral5100g00015 1277 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Pral5100g00015 1277 FunFam ABC transporter B family member 9 999 1021 - -
Pral5100g00015 1277 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1015 - -
Pral5100g00015 1277 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524|GO:0016887
Pral5100g00015 1277 Gene3D - 373 630 IPR027417 -
Pral5100g00015 1277 FunFam ABC transporter B family member 1 1022 1272 - -
Pral5100g00015 1277 FunFam ABC transporter B family member 1 365 614 - -
Pral5100g00015 1277 Pfam ABC transporter transmembrane region 53 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5100g00015 1277 Pfam ABC transporter transmembrane region 711 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5100g00015 1277 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 336 - -
Pral5100g00015 1277 MobiDBLite consensus disorder prediction 617 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5100g00015 Pral-Chr5100 66704 72025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5100g00015 28 1271 Calmodulin-binding Proteins AT2G36910 45.251 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5100g00015 K05658 - gmx:100800034 2046.94