Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5100g00002 ATGGAAGGCATTCCAATAGGCAGAAAACTCAATCTGGTAGCTCACGACGGCTACCATGGGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTCATGGTCGGTGATGTTCCGTGGGAAATGTTCCTCTCAACAGTGAAGAGATTGAAGATTACGAGGGTAGACGCATTCGGGTGTTAA 264 0.4848 MEGIPIGRKLNLVAHDGYHGLVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5100g00002 87 Gene3D - 1 86 - -
Pral5100g00002 87 Pfam AUX/IAA family 1 81 IPR033389 -
Pral5100g00002 87 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 82 IPR003311 GO:0005634|GO:0006355
Pral5100g00002 87 ProSiteProfiles PB1 domain profile. 1 84 IPR000270 GO:0005515
Pral5100g00002 87 SUPERFAMILY CAD & PB1 domains 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5100g00002 Pral-Chr5100 8851 9609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5100g00002 1 79 B3 DNA Binding Superfamily AT4G23980 37.975 8.37e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5100g00002 AUX_IAA 1.3e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5100g00002 K14484 - gmx:100783140 167.548