Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5099g00006 ATGGGCAAAGCCTCTAGCTCTTCCTCTTCCTCTATCAGCAGCAACAACCACCCCCTTATCTCAACTGCTTCATCCCTCACCCGCCTCCACCACTCTGACCTTCCTACAGATCTCAGGCTTGGCCTCGGCATTTCAGCAACTCAACATGTCGGCTCTTCTGTTTCAAGGGGGCAAGCAACAGATTGGATCCCAAACCAGCGTGCTCATCATGCGGCAGAAGTAAATGATTGTGGTGATCATGGCAGCTTGTTTGTAAAGGTGTACATGGAAGGCATTCCAATAGGCAGAAAACTCAATCTGGTAGCTCACGACGGCTACCATGGGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTCATGGTCGGTGATGTTCCGTGGGAAATGTTCCTCTCAACAGTGAAGAGATTGAAGATTACGAGGGTAGACGCATTCGGGTGTTAA 528 0.4981 MGKASSSSSSSISSNNHPLISTASSLTRLHHSDLPTDLRLGLGISATQHVGSSVSRGQATDWIPNQRAHHAAEVNDCGDHGSLFVKVYMEGIPIGRKLNLVAHDGYHGLVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5099g00006 175 SUPERFAMILY CAD & PB1 domains 79 167 - -
Pral5099g00006 175 Pfam AUX/IAA family 69 169 IPR033389 -
Pral5099g00006 175 Gene3D - 77 174 - -
Pral5099g00006 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 170 IPR003311 GO:0005634|GO:0006355
Pral5099g00006 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5099g00006 Pral-Chr5099 38911 40023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5099g00006 86 167 B3 DNA Binding Superfamily AT4G23980 39.024 7.96e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral5099g00006 AUX_IAA 8.8e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5099g00006 K14484 - gmx:100783140 250.366